Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03630 ATGGGTGAGAAAGATATTGGTAATGAAGATGTGGGGTTGAGTTTGAGTTTGAGTTTGAGTTTGGGAAGAGGATGTTCTTCATCTCCGCCACCTTTGAAGCCACAAAGATCGGTTCCTATGAATAACATCAACGAGAAGAGTTCATGGAATGAGTTGTTTCAGTTATTACCACAAGCAATGCCACTGACTGAAAAACTAAACATGCAAAACGCAGTAGATAGGAGCACAGATATGAGGCCGTTATTTGGTGGAGGAATCAACATGAATTCGATGCCGTCAACGGCGGAGACTCCGCCGGATTGCAACCAGGACAACCGTGATTCATCGCCAAACAACAGCAGTTTATCAAGTGGCAGTGGCTGCAAGCGAAGCGAGAGAGAAGAGGACAATGGCGCTGCGGTTGCCGGCATCGAATTGGCGTCGTGCTCGCGGGGAAGTGATGACGAGGATGGCGGCGGCGGAGAGGCGGCGAGGAAGAAGCTGAGGCTGACGAAGGAGCAGTCGATGTTATTGGAAGAAACGTTCAAGCAGCATAACACGCTGAACCCGAAACAAAAACAGACATTGGCAAAGGAATTGAATCTGAGAGCCAGACAGGTGGAGGTGTGGTTCCAGAATAGGAGAGCAAGGACCAAGTTGAAGCAAACCGAAGTGGATTGTGAATACTTGAAGAGATATTGTGAGAATCTAAGTGAAGAGAATAGGAGGTTGCAAAAAGAAGTGCAAGAGCTTAGGACATTGAAGCTATCTCCACAGCTCTACATGCATATGAACCCTCCAACAACTCTTACAATGTGCCCTTCTTGCGAGCGTGTCGCCGTCTCATCCGCCTCGTCCTCCGCCTCCACCGCTCACGTGCCGGCACTACAAAGTAATTGCAACAACTCGTTGGGTCCAAACATCCAGCGGCCGGTGCGCGTCAACACTTGGCCATTTGACAGCCCAATTTCGCGGCCGTAG 960 0.4958 MGEKDIGNEDVGLSLSLSLSLGRGCSSSPPPLKPQRSVPMNNINEKSSWNELFQLLPQAMPLTEKLNMQNAVDRSTDMRPLFGGGINMNSMPSTAETPPDCNQDNRDSSPNNSSLSSGSGCKRSEREEDNGAAVAGIELASCSRGSDDEDGGGGEAARKKLRLTKEQSMLLEETFKQHNTLNPKQKQTLAKELNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLSEENRRLQKEVQELRTLKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSASTAHVPALQSNCNNSLGPNIQRPVRVNTWPFDSPISRP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03630 319 ProSitePatterns 'Homeobox' domain signature. 189 212 IPR017970 GO:0000981|GO:0006355
Arst4g03630 319 CDD homeodomain 158 215 IPR001356 GO:0003677
Arst4g03630 319 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 35 290 - -
Arst4g03630 319 SMART HOX_1 156 218 IPR001356 GO:0003677
Arst4g03630 319 ProSiteProfiles 'Homeobox' domain profile. 154 214 IPR001356 GO:0003677
Arst4g03630 319 Gene3D - 152 219 - -
Arst4g03630 319 Pfam Homeodomain 158 212 IPR001356 GO:0003677
Arst4g03630 319 FunFam Homeobox-leucine zipper protein 18 143 219 - -
Arst4g03630 319 Coils Coil 220 250 - -
Arst4g03630 319 Pfam HD-ZIP protein N terminus 8 127 IPR006712 GO:0005634
Arst4g03630 319 SUPERFAMILY Homeodomain-like 147 215 IPR009057 -
Arst4g03630 319 Pfam Homeobox associated leucine zipper 214 247 IPR003106 GO:0006355|GO:0043565
Arst4g03630 319 SMART halz 214 257 IPR003106 GO:0006355|GO:0043565
Arst4g03630 319 MobiDBLite consensus disorder prediction 76 129 - -
Arst4g03630 319 MobiDBLite consensus disorder prediction 87 120 - -
Arst4g03630 319 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03630 Arst-Chr4 115057297 115060425 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03630 6 310 Homeobox Transcription Factor Family AT5G47370 50.000 9.69e-82 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst4g03630 HD-ZIP_N 1.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03630 K09338 - gmx:100819624 291.582