Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03629 ATGGGTGAGAAAGATATTGGTAATGAAGATGTGGGGTTGAGTTTGAGTTTGAGTTTGAGTTTGGGAAGAGGATGTTCTTCATCTCCGCCACCTTTGAAGCCACAAAGATCGGTTCCTATGAATAACATCAACGAGAAGAGTTCATGGAATGAGTTGTTTCAGTTATTACCACAAGTAGATAGGAGCACAGATATGAGGCCGTTATTTGGTGGAGGAATCAACATGAATTCGATGCCGTCAACGGCGGAGACTCCGCCGGATTGCAACCAGGACAACCGTGATTCATCGCCAAACAACAGCAGTTTATCAAGTGGCAGTGGCTGCAAGCGAAGCGAGAGAGAAGAGGACAATGGCGCTGCGGTTGCCGGCATCGAATTGGCGTCGTGCTCGCGGGGAAGTGATGACGAGGATGGCGGCGGCGGAGAGGCGGCGAGGAAGAAGCTGAGGCTGACGAAGGAGCAGTCGATGTTATTGGAAGAAACGTTCAAGCAGCATAACACGCTGAACCCGAAACAAAAACAGACATTGGCAAAGGAATTGAATCTGAGAGCCAGACAGGTGGAGGTGTGGTTCCAGAATAGGAGAGCAAGGACCAAGTTGAAGCAAACCGAAGTGGATTGTGAATACTTGAAGAGATATTGTGAGAATCTAAGTGAAGAGAATAGGAGGTTGCAAAAAGAAGTGCAAGAGCTTAGGACATTGAAGCTATCTCCACAGCTCTACATGCATATGAACCCTCCAACAACTCTTACAATGTGCCCTTCTTGCGAGCGTGTCGCCGTCTCATCCGCCTCGTCCTCCGCCTCCACCGCTCACGTGCCGGCACTACAAAGTAATTGCAACAACTCGTTGGGTCCAAACATCCAGCGGCCGGTGCGCGTCAACACTTGGCCATTTGACAGCCCAATTTCGCGGCCGTAG 921 0.4995 MGEKDIGNEDVGLSLSLSLSLGRGCSSSPPPLKPQRSVPMNNINEKSSWNELFQLLPQVDRSTDMRPLFGGGINMNSMPSTAETPPDCNQDNRDSSPNNSSLSSGSGCKRSEREEDNGAAVAGIELASCSRGSDDEDGGGGEAARKKLRLTKEQSMLLEETFKQHNTLNPKQKQTLAKELNLRARQVEVWFQNRRARTKLKQTEVDCEYLKRYCENLSEENRRLQKEVQELRTLKLSPQLYMHMNPPTTLTMCPSCERVAVSSASSSASTAHVPALQSNCNNSLGPNIQRPVRVNTWPFDSPISRP 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03629 306 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 18 277 - -
Arst4g03629 306 Gene3D - 139 206 - -
Arst4g03629 306 SUPERFAMILY Homeodomain-like 134 202 IPR009057 -
Arst4g03629 306 SMART halz 201 244 IPR003106 GO:0006355|GO:0043565
Arst4g03629 306 SMART HOX_1 143 205 IPR001356 GO:0003677
Arst4g03629 306 Coils Coil 207 237 - -
Arst4g03629 306 Pfam Homeodomain 145 199 IPR001356 GO:0003677
Arst4g03629 306 MobiDBLite consensus disorder prediction 19 43 - -
Arst4g03629 306 CDD homeodomain 145 202 IPR001356 GO:0003677
Arst4g03629 306 ProSitePatterns 'Homeobox' domain signature. 176 199 IPR017970 GO:0000981|GO:0006355
Arst4g03629 306 MobiDBLite consensus disorder prediction 63 116 - -
Arst4g03629 306 FunFam Homeobox-leucine zipper protein 18 130 206 - -
Arst4g03629 306 ProSiteProfiles 'Homeobox' domain profile. 141 201 IPR001356 GO:0003677
Arst4g03629 306 MobiDBLite consensus disorder prediction 74 107 - -
Arst4g03629 306 Pfam HD-ZIP protein N terminus 8 114 IPR006712 GO:0005634
Arst4g03629 306 Pfam Homeobox associated leucine zipper 201 234 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03629 Arst-Chr4 115057297 115060425 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03629 6 297 Homeobox Transcription Factor Family AT5G47370 51.656 6.48e-83 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst4g03629 HD-ZIP_N 2.4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03629 K09338 - gmx:100819624 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g03629 4 115057297 115060425 Arst4g03629 4 115057297 115060425 ECH
Arst2g00650 2 6614740 6618346 Arst4g03629 4 115057297 115060425 PCT