Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03422 ATGGAATTCGATGCTGCAATTCCCATGTCCCGTGAAGGCATCCCTCAAGATGCAATGTGGCAAATGAACTTGAGGTCGAGTGAAACGATGGAACCTGGACCTTATCCTGAGCATCCAGGAGAACCAGATTGTTCATATTACATCAGAACAGGACTCTGTAGATTCGGAGCAACATGTCGATTTAACCATCCTCCTAACAGGAAACTGGCTATTGCCGCTGCACGGATGAAAGGAGAGTTCCCAGAAAGGATAGGGCAGCCAGAATGTCAGTATTATCTGAAGACAGGAACTTGCAAATTCGGAGCCACATGCAAGTTTCATCATCCTAGAGACAAGGCCGGGATTGCTGGAAGAGTTGCTTTAAATATTTTAGGCTATCCACTCCGCCCGAATGAGGCGGAATGTGCTTACTATTTAAGAACCGGACAGTGCAAATTTGGGAACACTTGCAAATTCCATCATCCTCAACCAAGTAATATGGTGCTTTCAATGCGCAGTTCTCCTGTTTACCCCACCGTTCATTCTCCAACAACGCCAGCGGGAGTGGTTTCGGTACCTGGCTGGGGTGCATACAATGGTCAAATGGGATCAGACAGTACACAACAATCAGTTGGAAATGGTCAAACATATGCATCCTCTCGTCAAGGCGAATCGGCAAATGCAGGATCCCAAGGAGCATATTCTCAATACCGTTCTGGATCAGTTCCTGTAGGTTTCTATGCATTGCAGAGGGAGAACATATTTCCTGAAAGACCTGGCCAGCCTGAATGCCAGTTCTACATGAAGACCGGAGATTGTAAGTTCGGTGCAGTCTGTCGTTTCCATCATCCGCGTGAGAGGCTGATTCCTGCTCCTGATTGTCTTTTGAGTCCAATTGGCCTTCCTTTACGTCCGGGAGAGCCATTGTGTGTCTTTTACTCGCGATATGGTATATGCAAATTCGGCCCGAGTTGCAAGTTTGACCACCCCATGGGAATCTTTGCCTATAATATGTCTACATCACCCTCAGCTGATGCTTCAGGACGACGAATGTTGGGTTCTTCATCAGGAACCGCCGCATTAAATTTATCACCAGAAGGACTTGTTGAGTCAGGCTCTGCGAAGCCAAGGAGGCTTTCATTGTCGGAGACTAGACAACTTCCTTCCAGTGATGATAACATTGATGATGAGGGATAA 1176 0.4694 MEFDAAIPMSREGIPQDAMWQMNLRSSETMEPGPYPEHPGEPDCSYYIRTGLCRFGATCRFNHPPNRKLAIAAARMKGEFPERIGQPECQYYLKTGTCKFGATCKFHHPRDKAGIAGRVALNILGYPLRPNEAECAYYLRTGQCKFGNTCKFHHPQPSNMVLSMRSSPVYPTVHSPTTPGXGVVSVPGWGAYNGQMGSDSTQQSVGNGQTYASSRQGESANAGSQGAYSQYRSGSVPVGFYALQRENIFPERPGQPECQFYMKTGDCKFGAVCRFHHPRERLIPAPDCLLSPIGLPLRPGEPLCVFYSRYGICKFGPSCKFDHPMGIFAYNMSTSPSADASGRRMLGSSSGTAALNLSPEGLVESGSAKPRRLSLSETRQLPSSDDNIDDEG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03422 392 SUPERFAMILY CCCH zinc finger 301 325 IPR036855 GO:0046872
Arst4g03422 392 FunFam CCCH type zinc finger protein 250 338 - -
Arst4g03422 392 Gene3D - 37 117 - -
Arst4g03422 392 ProSiteProfiles Zinc finger C3H1-type profile. 252 280 IPR000571 GO:0046872
Arst4g03422 392 PANTHER PROTEIN PHOSPHATASE RELATED 18 344 - -
Arst4g03422 392 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Arst4g03422 392 MobiDBLite consensus disorder prediction 339 392 - -
Arst4g03422 392 SUPERFAMILY CCCH zinc finger 131 157 IPR036855 GO:0046872
Arst4g03422 392 SUPERFAMILY CCCH zinc finger 43 66 IPR036855 GO:0046872
Arst4g03422 392 Gene3D - 244 329 - -
Arst4g03422 392 SMART c3hfinal6 252 279 IPR000571 GO:0046872
Arst4g03422 392 SMART c3hfinal6 298 325 IPR000571 GO:0046872
Arst4g03422 392 SMART c3hfinal6 83 110 IPR000571 GO:0046872
Arst4g03422 392 SMART c3hfinal6 129 156 IPR000571 GO:0046872
Arst4g03422 392 SMART c3hfinal6 38 65 IPR000571 GO:0046872
Arst4g03422 392 Gene3D - 118 164 - -
Arst4g03422 392 MobiDBLite consensus disorder prediction 194 228 - -
Arst4g03422 392 ProSiteProfiles Zinc finger C3H1-type profile. 298 326 IPR000571 GO:0046872
Arst4g03422 392 SUPERFAMILY CCCH zinc finger 87 112 IPR036855 GO:0046872
Arst4g03422 392 SUPERFAMILY CCCH zinc finger 256 282 IPR036855 GO:0046872
Arst4g03422 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 300 325 IPR000571 GO:0046872
Arst4g03422 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 86 110 IPR000571 GO:0046872
Arst4g03422 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 132 156 IPR000571 GO:0046872
Arst4g03422 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 40 65 IPR000571 GO:0046872
Arst4g03422 392 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 254 279 IPR000571 GO:0046872
Arst4g03422 392 ProSiteProfiles Zinc finger C3H1-type profile. 83 111 IPR000571 GO:0046872
Arst4g03422 392 FunFam Zinc finger nuclease 2 37 114 - -
Arst4g03422 392 ProSiteProfiles Zinc finger C3H1-type profile. 39 66 IPR000571 GO:0046872
Arst4g03422 392 MobiDBLite consensus disorder prediction 339 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03422 Arst-Chr4 112196737 112201729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03422 19 390 C2H2 Transcription Factor Family AT3G02830 60.705 1.33e-163 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Arst4g03422 zf-CCCH 4.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03422 - - adu:107485976 811.216