Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03304 ATGGCAAATGCACACGCATTAGAGGAAGAGGAAGAAGAAGGAGAGGGACACGAAGCGGTGGAGGAAATCCAACGCGTCATTGAATCGGTTGCGCAATTCGGACAGTATAGAAAGACACAGAGAAAAGAATGTCACAACTTGGTGCGGCGGTTCAAACTCATGCTGCCTATCGTGGAAGAGCTCCGAGATATTCCGGAGCCCTTCCACGAAAACGGCATCGTTTGGTTGAAGAAACTTAGGGATGCACTCTTGTTTGCCAAGGAACTCTTGAGGTTATGTAGCCAAGGAAGCAAAATTCTCCTTGCAATGGAGACGGAGGCATATATGATAAAATTTCAAGGTGTTTATGAGAAATTGAGTCAAGCATTTGAAGATGTGCCTTGTGAGGAATTAGGAATCTCAGATGAAGTCAGAGAACAGATTGAGCTAATGCACACTCAGCTCAAGCGGGCGAGGAGGAGGACGGATACACAGGACATGGAGCTTGCAATGGATATGATGGTGGTGTTATCCGGCGATGAGCAACGGAGCGCCGACAGTGCCATCATTGAGAGGCTAGCAAAGAAATTAGAGCTTCAAAGGGTTGAGGATCTTAAGATAGAAACCTTGGCGATCAAGCAACTGGCTGATGAAAGAAAAGGGCAACAAGTAGATAGCACCAAGAAAATAATTGGCCTCCTTAACAAGTTGAAGAGAATTGCTGGCATGGAAGAAACAAGTGTTCTTGATGATCCTGTCCTGCCTAGGGTGCTTGTGAAGAGCATATCTTTGGTTATTCCTCATGAGTTTCTTTGTCCTATAACCCTTGAAATCATGACAGATCCTGTTATTATTGCAAGTGGACAGACATATGAAAGGGAAAGCATAGTGAAATGGTTTGAATCCAAACATAATACCTGTCCAAAGACAAGGCAAACCCTTGATCACTTGCAACTAGCACCAAATTGTGCCTTAAAGAGCATAATTGAAGAATGGTGTGAGAAAAACCACTTCAAACTACCAAAGAAGTTCAAATTCATTCGAATGCTGTCGAAAGAAAGCCCCGAGAATCGGATCTTGATTGCTGAGCATGGAGGAATACCACCATTGATACAAATCTTATCTTATCCGGATTCAAAGATTCAAGAACATGCTGTGACAGCATTGTTGAATCTTTCAATTGATGAGAAGAACAAGAGGCTAATATCAAAAGAAGGTGCTATTCCAGCAATCATAGAGGTTTTGGAGAATGGTAGCATTGTTGCTAAGGAAAATTCAGCAGCATGTTTGTTTAGTCTCTCAATGCTTGATGAGAACAAAGAACTTGTGGGATTGTCAAATGGGATTCCACCATTGGTGAAACTTTTGAGGAATGGAACAGTTAGAGGGAAAAAAGATGCTATTACAGCACTTTTTAATTTGTCCCTTAACCATGCAAATAAAAGCAGGGCGATTAGTGCTGGTATTGTCGCACCTTTGCTTCAGTTGCTTAAGGACACAAAAACAAACATGATTGACGAGGCTCTATCCATTCTGTTACTGCTCTCCTCGATTTCCGAGGGGAGACAGGAGATTGGACAGCTGTCATTTATCGAGACACTTGTTGAGTTCATTAAGGATGGGACCCCCAAGAACAAGGAGTGTGCTGCTTCTGTGCTCCTGGAGTTGTGTACAAATAACTACTCTTATATACTTGCAGCACTTCAGTATGGAGTTTATGAGCATTTGATTCAGATCAAAGGGAGTGGAACAAATAGAGCACAGAGGAAAGCAAATGCTCTCTTAGATCTTATAAGTAGGAGTGAGCAAATTTAG 1794 0.4236 MANAHALEEEEEEGEGHEAVEEIQRVIESVAQFGQYRKTQRKECHNLVRRFKLMLPIVEELRDIPEPFHENGIVWLKKLRDALLFAKELLRLCSQGSKILLAMETEAYMIKFQGVYEKLSQAFEDVPCEELGISDEVREQIELMHTQLKRARRRTDTQDMELAMDMMVVLSGDEQRSADSAIIERLAKKLELQRVEDLKIETLAIKQLADERKGQQVDSTKKIIGLLNKLKRIAGMEETSVLDDPVLPRVLVKSISLVIPHEFLCPITLEIMTDPVIIASGQTYERESIVKWFESKHNTCPKTRQTLDHLQLAPNCALKSIIEEWCEKNHFKLPKKFKSXIRMLSKESPENRILIAEHGGIPPLIQILSYPDSKIQEHAVTALLNLSIDEKNKRLISKEGAIPAIIEVLENGSIVAKENSAACLFSLSMLDENKELVGLSNGIPPLVKLLRNGTVRGKKDAITALFNLSLNHANKSRAISAGIVAPLLQLLKDTKTNMIDEALSILLLLSSISEGRQEIGQLSFIETLVEFIKDGTPKNKECAASVLLELCTNNYSYILAALQYGVYEHLIQIKGSGTNRAQRKANALLDLISRSEQI 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03304 598 FunFam RING-type E3 ubiquitin transferase 305 598 - -
Arst4g03304 598 SUPERFAMILY ARM repeat 341 594 IPR016024 -
Arst4g03304 598 CDD RING-Ubox_PUB 260 312 IPR045210 -
Arst4g03304 598 SUPERFAMILY RING/U-box 258 333 - -
Arst4g03304 598 Gene3D - 339 597 IPR011989 -
Arst4g03304 598 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 441 483 IPR000225 GO:0005515
Arst4g03304 598 FunFam RING-type E3 ubiquitin transferase 254 332 - -
Arst4g03304 598 Gene3D - 16 129 IPR036537 GO:0007166
Arst4g03304 598 PANTHER U BOX DOMAIN-CONTAINING 41 592 - -
Arst4g03304 598 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Arst4g03304 598 Pfam Armadillo/beta-catenin-like repeat 348 387 IPR000225 GO:0005515
Arst4g03304 598 Pfam Armadillo/beta-catenin-like repeat 431 469 IPR000225 GO:0005515
Arst4g03304 598 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 333 IPR013083 -
Arst4g03304 598 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 359 401 IPR000225 GO:0005515
Arst4g03304 598 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Arst4g03304 598 FunFam RING-type E3 ubiquitin transferase 16 129 - -
Arst4g03304 598 Coils Coil 134 154 - -
Arst4g03304 598 SMART arm_5 389 429 IPR000225 GO:0005515
Arst4g03304 598 SMART arm_5 471 511 IPR000225 GO:0005515
Arst4g03304 598 SMART arm_5 430 470 IPR000225 GO:0005515
Arst4g03304 598 SMART arm_5 512 552 IPR000225 GO:0005515
Arst4g03304 598 SMART arm_5 348 388 IPR000225 GO:0005515
Arst4g03304 598 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03304 Arst-Chr4 110697483 110700596 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03304 20 598 U-box Gene Family AT5G42340 60.328 0.0 703
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03304 - - gmx:100789656 875.93