Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03130 ATGAACAACAATAGAGCGCGGTACCCACCTGGGATCGGATTAGGTCGTGGAAATGGTGGTTTCAACACTGGGTTTCAACCAAGGCCACCTCAACAACAGTATGTGCAAAGGCACATCAGCACTATCAGCAGAATCAGCAACAACATCAACAGCAGCAGCAACAACAACAACAACAGCAACAACAATGGTTGAGAAGGACCCAATTGGGTGGCGGTGGAAGTAATGACAATAACGTTGTTGAGGAGGTTGAGAAGACCGTACAGTCTGAAGCCGTGGACTCAAGTTCACAAGATTGGAAGGCAAGATTAAAGGTTCCACCGCCTGATACACGCTATAAGACTGAGGATGTAACGGCAACTAAAGGAAATGAATTCGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAGAGACCTTCACCAATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGCAGTGACATTCTTGCAAGGGCTAAGAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCTGCATTGGAAAAAATTGATCAAGATAATAATGTTATTCAAGTTGTTATATTGGTCCCAACCAGAGAATTGGCCTTGCAGACTTCTCAAGTGTGTAAAGAACTCGGAAAACATTTGAAAATTCAGGTTATGGTAACCACTGGTGGTACCAGCCTAAAAGATGACATTATGCGTTTATATCAACCAGTTCATTTGCTGGTTGGAACTCCAGGAAGAATTTTGGATCTTGCAAAGAAGGGCGTTTGTGTTTTGAAAGATTGCTCTATGCTAGTTATGGATGAGGCTGATAAGCTTCTGTCCCCGGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTCCTCCAACCCGTCAAATCCTGATGTTTTCTGCAACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCGAAAGCCATATATCATTAATCTTATGGATGAGCTAACTCTGAAGGGTATCACACAGTATTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTAAATACTCTTTTCTCTAAGCTTCAAATAAACCAGTCAATCATCTTCTGTAATTCAGTGAATCGGGTTGAACTCCTTGCCAAGAAAATAACAGAACTTGGATATTCTTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGTAACAGAGTATTTCACGATTTCCGCAATGGTGCATGCAGGAATCTTGTTTGTACTGATCTTTTTACTAGAGGTATAGACATCCAAGCAGTCAACGTTGTTATTAACTTTGATTTTCCGAAGAACTCAGAAACCTATCTGCACAGGGTTGGTCGTTCAGGAAGGTTTGGACACCTTGGTTTAGCAGTAAACTTGATTACATATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAGCTTGGCACTGAAATAAAACAAATTCCACCACATATTGATCAGGCTATATATTGCCGGTGA 1493 0.4086 MNNNRARYPPGIGLGRGNGGFNTGFQPRPPQQQYVQRHMVQQQHPQHYQHYQQNQQQHQQQQQQQQQQQQQWLRRTQLGGGGSNDNNVVEEVEKTVQSEAVDSSSQDWKARLKVPPPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDEADKLLSPEFQPSIEQLIQFLPPTRQILMFSATFPVTVKDFKDRYLRKPYIINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03130 506 SMART ultradead3 151 347 IPR014001 -
Arst4g03130 506 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 343 503 IPR001650 -
Arst4g03130 506 MobiDBLite consensus disorder prediction 1 123 - -
Arst4g03130 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 486 IPR027417 -
Arst4g03130 506 FunFam ATP-dependent RNA helicase DDX6 337 506 - -
Arst4g03130 506 Gene3D - 86 336 IPR027417 -
Arst4g03130 506 CDD SF2_C_DEAD 344 473 - -
Arst4g03130 506 Pfam Helicase conserved C-terminal domain 358 464 IPR001650 -
Arst4g03130 506 Gene3D - 337 506 IPR027417 -
Arst4g03130 506 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 279 287 IPR000629 -
Arst4g03130 506 FunFam ATP-dependent RNA helicase DDX6 113 336 - -
Arst4g03130 506 Coils Coil 48 71 - -
Arst4g03130 506 MobiDBLite consensus disorder prediction 24 105 - -
Arst4g03130 506 CDD DEADc_DDX6 134 334 - -
Arst4g03130 506 SMART helicmild6 383 464 IPR001650 -
Arst4g03130 506 Pfam DEAD/DEAH box helicase 157 321 IPR011545 GO:0003676|GO:0005524
Arst4g03130 506 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 132 160 IPR014014 GO:0003724
Arst4g03130 506 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 163 333 IPR014001 -
Arst4g03130 506 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 64 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03130 Arst-Chr4 107928861 107934370 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03130 132 503 Eukaryotic Initiation Factors Gene Family AT3G19760 38.235 5.47e-95 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03130 K12614 - tcc:18614173 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g03130 4 107928861 107934370 Arst4g03130 4 107928861 107934370 ECH