Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03126 ATGACCGGTTCTGTTCTTGCAACCTTGGTTCCCAGTTCCAATTGCAATTCCAGACCGTGGTGGTGGGACTGGCCATCACTCTCTCAAAGGCCGTCACTGATTTCTCCTTGGCGCACTACTCCCTCCATCACCACCACAGCCACCGTCTTCTCCTCCTCTCAGCAACAAGACATCGGCATCATAACAAGCATTGATTCGTCCTCATCCTCAATAAGCCCGAGTTTCGAAAGACTGAAAACTCAGAAAGTCAAAGCTCTCGTCCACAGTTCTAAGCAGCACAGAAACAGAAGCACTGACGATGGTCGACCACGTGATTCATCGCCAAAGCCAAACCCTCGTTCAAGAGGAGGATGGGGGGATGCTGGAGGATCCTTCCGTTCTCTTCATTCTCAGGAGCTCGCTCCCGACACCAGCTTCTTCAGTGTCAAGTCCTTCAGGGAACTAGGCTGCGCTGACTACCTCATCCAATCACTCCAAAAGCTCTCTTTCCCGCGCCCTTCCAATGTACAGGCCATGGCATTTGCACCTGTTATTGCTGGAAAGACTTGTATTATAGCTGACCAAAGTGGTTCTGGAAAGACTTTAGCATATCTTGCACCAATAATTCAGCGTCTTAGGCAAGAAGAACTAGAAGGACACAGTAAATCCTCTCCTCAAGCTCCTAGAGTTGTCATACTAGCACCAACAGCTGAATTAGCTTCCCAGGTCTTAGATAATTGTCGATCACTGTCTAGATCTGGGGTTCCATTTAAATCTATGGTTGTCACAGGTGGCTTTCGACAAAGAACTCAACTGGAAACTTTACAACAGGGTGTTGATGTATTAATAGCTACACCTGGCCGTTTTTTGTTCCTTATGAAGGAGGGCTTCTTGCAGTTAACAAATCTAAGATGTGTTGTTTTGGATGAGGTAGATATTCTCTTTGGTGATGAGGATTTCGAAGTGGCTCTTCAAAGCTTGATCAATTCCTCACCCATAACTACACAATACTTATTTGTGACTGCAACTCTACCAAGAGATGTTTACAGCAAACTGGTTGAAATTTTCCCCGATTGTGAAATGATCATGGGACCTAGTATGCACCGAATAAGCCCACGCCTTGAAGAGATCATAGTAGATTGCAGTGGAGAAGATGGGCAAGAAAAAACTACTGATACAGCATTTCTGAACAAGAAATCTGCTCTTCTGCAGCTTGCAGAGGAACGCCCTGTTCCAAGAACTATTGTGTTTTGCAACAAAATTGAAACATGCAGAAAAGTTGAGAATGCATTAAAGCGTATAGATAGAAAGGGAGCAGTTATACAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCAAGGCTTGCAAGTATGAAGGAGTTTGCACGTTCACCGTCAAAACAAGTGTCCCAGTTTATGGTTTGCACGGACCGAGCATCAAGGGGAATAGACTTTTGGGGAGTGGAGCACGTGATACTGTTCGACTTCCCGAGGGATCCAAGCGAATATGTGAGGCGTGTCGGAAGAACGGCGAGAGGTGCCAAGGGTGTGGGGAAGGCATTCATATTCGTGGTAGGCAAGCAAGTATCGCTTGCACGCAAAATCATGGAAAGAAATAGGAAGGGTCACCCCTTACATGATGTCCCTTCTGCTGTTACCTTCTAG 1647 0.4602 MTGSVLATLVPSSNCNSRPWWWDWPSLSQRPSLISPWRTTPSITTTATVFSSSQQQDIGIITSIDSSSSSISPSFERLKTQKVKALVHSSKQHRNRSTDDGRPRDSSPKPNPRSRGGWGDAGGSFRSLHSQELAPDTSFFSVKSFRELGCADYLIQSLQKLSFPRPSNVQAMAFAPVIAGKTCIIADQSGSGKTLAYLAPIIQRLRQEELEGHSKSSPQAPRVVILAPTAELASQVLDNCRSLSRSGVPFKSMVVTGGFRQRTQLETLQQGVDVLIATPGRFLFLMKEGFLQLTNLRCVVLDEVDILFGDEDFEVALQSLINSSPITTQYLFVTATLPRDVYSKLVEIFPDCEMIMGPSMHRISPRLEEIIVDCSGEDGQEKTTDTAFLNKKSALLQLAEERPVPRTIVFCNKIETCRKVENALKRIDRKGAVIQVLPFHAAMTQESRLASMKEFARSPSKQVSQFMVCTDRASRGIDFWGVEHVILFDFPRDPSEYVRRVGRTARGAKGVGKAFIFVVGKQVSLARKIMERNRKGHPLHDVPSAVTF 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03126 548 Gene3D - 126 355 IPR027417 -
Arst4g03126 548 CDD DEADc 154 341 - -
Arst4g03126 548 CDD SF2_C_DEAD 367 518 - -
Arst4g03126 548 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 355 IPR014001 -
Arst4g03126 548 SMART helicmild6 418 508 IPR001650 -
Arst4g03126 548 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 390 548 IPR001650 -
Arst4g03126 548 MobiDBLite consensus disorder prediction 86 127 - -
Arst4g03126 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 519 IPR027417 -
Arst4g03126 548 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 84 544 - -
Arst4g03126 548 Gene3D - 364 540 IPR027417 -
Arst4g03126 548 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Arst4g03126 548 Pfam DEAD/DEAH box helicase 168 341 IPR011545 GO:0003676|GO:0005524
Arst4g03126 548 MobiDBLite consensus disorder prediction 92 109 - -
Arst4g03126 548 SMART ultradead3 162 370 IPR014001 -
Arst4g03126 548 Pfam Helicase conserved C-terminal domain 391 507 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03126 Arst-Chr4 107909764 107915790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03126 137 516 Eukaryotic Initiation Factors Gene Family AT3G13920 28.534 1.61e-30 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03126 K13179 - gmx:100784377 722.62