Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03124 ATGTCATTCACAGGAACTTTGGACAAATGCAAGGCTTGTGACAAAACTGTTTATGTGGTTGATTTGTTAACTCTTGAAGGTATACCTTACCATAAAAACTGCTTCAGATGCACTCACTGCAAGGGTTATCTTACGATGAGTACCTATTCCTCAATGGATGGTGTCCTGTATTGCAAGACACACTTTGAACAGCTTTTCAAGGAATCTGGAAATTTTAGTAAGAACTTTCAAACAGCAAAGCCTTCTGAAAAATCAAATGATGCGAACAAGGCTCCAAGCAGACTCTCATCCATGTTTAGTGGAACTCTAGACAAATGCTCAGTTTGTGGAAAAACAGTGTATCCACTGGAGAAGATGTCGCTGGAAGGAGAGTGCTATCACAAGACATGCTTTAGGTGTGCTCATGCAGGTTGTCCTCTGACACACTCCAACTATGCTGCCCTTGATGGTGTCCTGTATTGCAAGCACCATTTCCAGCAGCTCTTCATGGAGAAGGGTAACTACAACCATGTACTCCAGGCTGCAAAGGACAAAAAGGTCAATGCCACTCCACCTTCTGAACAAGCCGATGCTGAAGATGGCGAGAAGCCGGAGTCCGAGGAGAAGAAAGAGGAAGAAGAAGAAGCAGCTCATGAGGAAGAAGAATCTAAGGAAGAGGAAGAGGAAAAGAAAGATGAGGACACTTAG 687 0.4367 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKNCFRCTHCKGYLTMSTYSSMDGVLYCKTHFEQLFKESGNFSKNFQTAKPSEKSNDANKAPSRLSSMFSGTLDKCSVCGKTVYPLEKMSLEGECYHKTCFRCAHAGCPLTHSNYAALDGVLYCKHHFQQLFMEKGNYNHVLQAAKDKKVNATPPSEQADAEDGEKPESEEKKEEEEEAAHEEEESKEEEEEKKDEDT 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03124 228 Gene3D Cysteine Rich Protein 5 72 - -
Arst4g03124 228 Pfam LIM domain 106 161 IPR001781 -
Arst4g03124 228 Pfam LIM domain 10 65 IPR001781 -
Arst4g03124 228 MobiDBLite consensus disorder prediction 176 228 - -
Arst4g03124 228 Gene3D Cysteine Rich Protein 102 170 - -
Arst4g03124 228 MobiDBLite consensus disorder prediction 199 228 - -
Arst4g03124 228 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Arst4g03124 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Arst4g03124 228 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Arst4g03124 228 SMART lim_4 9 61 IPR001781 -
Arst4g03124 228 SMART lim_4 105 157 IPR001781 -
Arst4g03124 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Arst4g03124 228 FunFam LIM domain and actin-binding 1 100 170 - -
Arst4g03124 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Arst4g03124 228 Coils Coil 196 226 - -
Arst4g03124 228 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Arst4g03124 228 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Arst4g03124 228 FunFam LIM domain and actin-binding 1 4 74 - -
Arst4g03124 228 CDD LIM1_SF3 6 68 - -
Arst4g03124 228 PANTHER OS06G0237300 PROTEIN 6 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03124 Arst-Chr4 107896284 107898373 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Arst4g03124 LIM 3.3e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03124 - K09377 gmx:100779513 352.829