Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03117 CATTACTATGCACCAAACAGTAACAATAATTCTTCCTTTTCAGTACCAACACAGATAGTGCCTCATGCCTATGACTCAGCCTTTGCCTCTCTTCAATTCCAATATCTATGGCCTTTAGTCTTTGAAGGATTTCCAGAAGATAGACCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCAGAGAAAAGAAGAAGGGACAGAATCAATGCACAGCTTGCAACTCTTAGAAAACTGATTCCTAAGTCTGATAAAATGGACAAGGCTGCATTACTAGGGAGTGTAGTAGATCATGTGAAGGATCTAAAGCGAAAAGCGATGGATGTGAGCAAAAGCATCACAATTCCAAGTGAAACTGATGAAGTAACAATAATATAG 372 0.3978 HYYAPNSNNNSSFSVPTQIVPHAYDSAFASLQFQYLWPLVFEGFPEDRPASASKSHSQAEKRRRDRINAQLATLRKLIPKSDKMDKAALLGSVVDHVKDLKRKAMDVSKSITIPSETDEVTII 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03117 123 PANTHER TRANSCRIPTION FACTOR BHLH30 45 122 IPR045847 GO:0003700|GO:0006355
Arst4g03117 123 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 50 104 IPR036638 GO:0046983
Arst4g03117 123 Pfam Helix-loop-helix DNA-binding domain 54 100 IPR011598 GO:0046983
Arst4g03117 123 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 100 IPR011598 GO:0046983
Arst4g03117 123 CDD bHLH_AtAIG1_like 46 123 - -
Arst4g03117 123 SMART finulus 57 106 IPR011598 GO:0046983
Arst4g03117 123 Gene3D - 46 109 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03117 Arst-Chr4 107599956 107600795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03117 41 122 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 52.222 1.10e-22 87.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Arst4g03117 HLH 2e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03117 - - adu:107485656 232.261