Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g03000 ATGGTAAGAGGAAAGACTCAGATGAGGCGCATAGAGAATGCAACAAGCAGGCAAGTAACATTCTCAAAGAGGCGTAACGGTTTGCTTAAGAAGGCCTTTGAGCTTTCTGTTCTTTGTGATGCTGAAGTTGCTCTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTTCTAGCTCCAGCATGCAAGAGACAATTGAACGCTATCGCAGACATACACGGAATGCTCAAACAACACCTAGATCAGATGAACAAAATACGCAGCATTTGAAGCAAGAAACGGCAAGTTTGATGAAGAAGATTGAGATTCTTGAAGCTTCAAAACGAAAATTGGTGGGAGAAGGTTTGGGATCATGTACCTTAGAAGAGTTACAACAAATAGAACAACAATTGGAAAAGAGTGTAACCAGTGTTAGAGCTAGAAAGACTCAGGTTTACAAGGAACAAATTGAGCAACTAAAGGAAAAGGAAAAAGCTCTAATTGCTGAAAATATCAAGCTTTCAGAACAGTATGGCATCCAAGCACCACAGGCAATTCTAAAGGATCAAAAAGAAAATGAACAACCCTACCCAGAAAGTAGTAGTCCAAGTTCAGATGTGGAGACTGAATTATTCATTGGACTACATAGGTCTAGTTGA 639 0.3975 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSMQETIERYRRHTRNAQTTPRSDEQNTQHLKQETASLMKKIEILEASKRKLVGEGLGSCTLEELQQIEQQLEKSVTSVRARKTQVYKEQIEQLKEKEKALIAENIKLSEQYGIQAPQAILKDQKENEQPYPESSSPSSDVETELFIGLHRSS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g03000 212 Coils Coil 121 141 - -
Arst4g03000 212 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Arst4g03000 212 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Arst4g03000 212 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Arst4g03000 212 SUPERFAMILY SRF-like 3 83 IPR036879 GO:0003677|GO:0046983
Arst4g03000 212 FunFam MADS-box protein SOC1 14 95 - -
Arst4g03000 212 Coils Coil 143 170 - -
Arst4g03000 212 MobiDBLite consensus disorder prediction 177 203 - -
Arst4g03000 212 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Arst4g03000 212 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Arst4g03000 212 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Arst4g03000 212 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Arst4g03000 212 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst4g03000 212 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 183 - -
Arst4g03000 212 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Arst4g03000 212 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Arst4g03000 212 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g03000 Arst-Chr4 105508492 105516589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g03000 1 158 MADS-box Gene Family AT2G45660 77.848 4.89e-88 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Arst4g03000 K-box 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g03000 - - gmx:100037477 302.367