LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g02977	ATGGCGTCTGCTTTAGGTGAAGGTGAAGCCTCTTCTTCTACTGCAACCGGAGACTCTTGTAAGCATCAGGTGTTCTTGAGTTTTAGGGGAGAAGACACCCGGAAAGGCTTCACTGATCATCTATCTGCCTCACTAGAAAGGCGAGGAATCACAGCTTACAGAGACGACAAGAACCTTGAGAAAGGTGATGCTATTCAAGATGAACTTTTGAAAGCAATAGAAGAATCTATGTTTGCTGTCGTTGTTCTCTCGCCAAACTATGCTTCCTCCAGTTGGTGCTTGGACGAGCTACACAAGATCCTTGAGTGCAGCAAGAATCATGGGCTATCTGTTGTGCCAGTCTTCTACAATGTGGAGCCTTCTGATGTTAGGCATCAAAAAGGAAACTTCAAGAAAGCTCTTAGAAAACATCAGAATAGATTTGGTCAAGACAGTGACAGGATTAGAAGATGGACAAATGCTTTGACCCAAATTGCTAGCTTTTCTGGTTGGGACTCCAAGAACCAGCAGGAGGCAAGACTAGTGGAGAACATAGTTGACCACATACAAAAGAAGCTACTTCCAAAATTTCCATCTTGCCCAGAAAATCTTGTTGGGATTCTTCCAAAGATGGAGGATGTGTTCTCACTTCTAGGTATGGGGTCAAATAATGTTCACTTTGTAGGCATACGGGGCATGGGTGGCATAGGTAAAACTACCGTTGCTAGAGCAGTCTATGAAGCCATCCAATCCAAGTTTCAAGTTTGTTGCTTTATGAGGGATGTTAGGGAGGTTTCCAAGGCAAAAGGTTTTGTTCACTTACAAAAGCTTCTTCTCTCAACACTAAATGTTAGTGATGAATTTTATGACATTGAAGATGGAAAGAAGATGATACGAAACTGGTTATGCAAGAAAAAGGTTCTTCTTGTTCTTGATGATGTAAGTGAGGAAATCCAGTTGGAAAATTTGGCCGGGAAGCAAGATTGGTTTGGTCCTGGAAGCACAGTAATAATCACAACAAGGTATATGCATTTGCTTGAGATACATAGAGTGAATGGAACATATAAGGTTGAAGGGTTGGTGGAAGAAGAAGCCCTCCGCCTCTTTTGTTTGAAAGCCTTTAAAAGAGATCAACCAGAAGAAGGCTATTTGGATTTGTCCAAAGACATTGTCAAATATACTGGTGGCCTTCCATTGGCACTTAAGGTATTAGGTTCCTATTGGTGTGGCAGAGATCTTCATTTTTGGCATAGAACTGCTAGAGAATTGAGCAGCGTTCTACCCTCGGAAATCCTCAATACTTTGAAAATAAGCTTTGACCATTTAGAGCCAACAGAGAAATATATCTTTCTGGATATTGCTTGTTTCTTCAAAGGAATGAACAGAGACGAAGTAGTAAATATATTACAGATGTGTGATTATTATGATGGAATTGAAAATGGAATTGTTACTTTGATTGAAAAATCTTTGATAACTCTAAGTAAGGATGAGATGTTGGAAATGCATGATCTGCTTCAAGATATGGGAAAAAATATTGTATTTCAAGAATTTCCAACTAATCCCGGGAAACGAAGCAGGTTGTGGTCTAAAAAGGACATTGATCAAGTTTTGACAAATGATATGGGAACTGAAGCAATTCAAGGAATTGTTCTACACTCAAGTTATGAAGCTCAGTGGAGTATTGAAGCCTTTTCAAAGACAAGTCAACTGACATTTCTCAGTTTACATGGCATGAAACTTCCACTTGGTCTCAACTACCTTCCTAGATCATTAAAAGTCCTTCATTGGAATTACTGTCCCTTGAAGACTTTACCCCTGGCGGATCAAAAGTATGAACTGGTTGAAATTAAACTGCGGAATAGCAAGATTGAGCAAGTTTGGCACGGGAAAAAGTTTCTTGAAAAGTTGAAGTACATGGATTTGAGTGTGTCTGAGAACCTAACTGGAACCCCTGATATTTCTGGTGCACCAATGCTTCAAAAGCTTAATCTGCAATTCTGCTCAGGGCTGAGTGAGGTTCACCCATCCCTTACACACCATGAGAACCTTGTTCAATTGGATTTCAGCAATTGCACAAGTCTCAAAACTATTCCAGGCAAACTGAAGATGAGTTCACTGGAGGAATTAGACCTGAGCAATTGCAGCAGTTTTGTAAACTTGCCAAAATTCGCGGAATGCATGAAACTATCATTGCTTTCTTTGAAACGAACCTCCATAAAAAACCTGCCACGTTCTGTCTCATCAAGTCTACCTTTGCTATGCAGTCTAGACTTAAGTTGCTGCAATCTAACTGAACTGGCATTCCCTTGCAACATTTTCCACTTGCCATTGTTGACTGATTTGAATCTGTCTCGTAACAAATTTGTCCATGTACCAATAAGCCTTCATAAACTTCCCAACCTCAAACGTCTTTGTCTAAATAATTGCCCAAATCTTAAGTCTCTCCCGGTGCTCCCCTCAAGTATTGAGAAATTGGAAGCATGCAATTCTTTCATTGCTTATGGTGAAATAGGATATTTTGATCCCTGTGAAACCATATTCAATTTCTTTCGATCATCGAGCAGTGATCATTCTCAGGTCTTTATCATGGAGTTCACATCATGGATATATAGGAAAGAAAAAGTTTCACCGTGGCAATCTTTTTTAAGGTTCAATCTAGAAGATGGTGAACATATTTCTCTCCCACCACAAGGTGATTTCCCTCCAAATGATAGGTTGGGAATTATACTATGCTTTGAGACAGCTACTTATTTGAACAAGACGGATTTGTGTGTCTGCAATGGTAGAAGATGGATCACCAAGAAGAATTCAGGCGAAAAGGGCGATCGCACGTATTTTATCCTTCTAACCAATGACTATTTTAATGCTGAATTATGCCCTGATTATACATTTAAGCTCTCTGTCAACAATGCCCTTAGTTACCACATGCACAACCAAGCATGGAGCTATGGCTCCAACCAATGCTGGGGCCGCTGGGTGCATCAACAATATTTTATTGACTATATGTATGATTTTGATTATTAA	3003	0.3986	MASALGEGEASSSTATGDSCKHQVFLSFRGEDTRKGFTDHLSASLERRGITAYRDDKNLEKGDAIQDELLKAIEESMFAVVVLSPNYASSSWCLDELHKILECSKNHGLSVVPVFYNVEPSDVRHQKGNFKKALRKHQNRFGQDSDRIRRWTNALTQIASFSGWDSKNQQEARLVENIVDHIQKKLLPKFPSCPENLVGILPKMEDVFSLLGMGSNNVHFVGIRGMGGIGKTTVARAVYEAIQSKFQVCCFMRDVREVSKAKGFVHLQKLLLSTLNVSDEFYDIEDGKKMIRNWLCKKKVLLVLDDVSEEIQLENLAGKQDWFGPGSTVIITTRYMHLLEIHRVNGTYKVEGLVEEEALRLFCLKAFKRDQPEEGYLDLSKDIVKYTGGLPLALKVLGSYWCGRDLHFWHRTARELSSVLPSEILNTLKISFDHLEPTEKYIFLDIACFFKGMNRDEVVNILQMCDYYDGIENGIVTLIEKSLITLSKDEMLEMHDLLQDMGKNIVFQEFPTNPGKRSRLWSKKDIDQVLTNDMGTEAIQGIVLHSSYEAQWSIEAFSKTSQLTFLSLHGMKLPLGLNYLPRSLKVLHWNYCPLKTLPLADQKYELVEIKLRNSKIEQVWHGKKFLEKLKYMDLSVSENLTGTPDISGAPMLQKLNLQFCSGLSEVHPSLTHHENLVQLDFSNCTSLKTIPGKLKMSSLEELDLSNCSSFVNLPKFAECMKLSLLSLKRTSIKNLPRSVSSSLPLLCSLDLSCCNLTELAFPCNIFHLPLLTDLNLSRNKFVHVPISLHKLPNLKRLCLNNCPNLKSLPVLPSSIEKLEACNSFIAYGEIGYFDPCETIFNFFRSSSSDHSQVFIMEFTSWIYRKEKVSPWQSFLRFNLEDGEHISLPPQGDFPPNDRLGIILCFETATYLNKTDLCVCNGRRWITKKNSGEKGDRTYFILLTNDYFNAELCPDYTFKLSVNNALSYHMHNQAWSYGSNQCWGRWVHQQYFIDYMYDFDY	1000

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g02977	1000	Gene3D	-	185	345	IPR027417	-
	Arst4g02977	1000	Gene3D	-	352	436	IPR042197	-
	Arst4g02977	1000	SUPERFAMILY	L domain-like	510	825	-	-
	Arst4g02977	1000	FunFam	Disease resistance protein (TIR-NBS-LRR class)	18	187	-	-
	Arst4g02977	1000	SUPERFAMILY	"Winged helix" DNA-binding domain	422	530	IPR036390	-
	Arst4g02977	1000	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	22	717	IPR044974	GO:0006952
	Arst4g02977	1000	SMART	till_3	21	161	IPR000157	GO:0007165
	Arst4g02977	1000	Pfam	TIR domain	21	196	IPR000157	GO:0007165
	Arst4g02977	1000	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	185	446	IPR027417	-
	Arst4g02977	1000	Pfam	NB-ARC domain	207	418	IPR002182	GO:0043531
	Arst4g02977	1000	PRINTS	Disease resistance protein signature	294	308	-	-
	Arst4g02977	1000	PRINTS	Disease resistance protein signature	220	235	-	-
	Arst4g02977	1000	PRINTS	Disease resistance protein signature	387	401	-	-
	Arst4g02977	1000	PRINTS	Disease resistance protein signature	694	710	-	-
	Arst4g02977	1000	ProSiteProfiles	TIR domain profile.	20	186	IPR000157	GO:0007165
	Arst4g02977	1000	Gene3D	Ribonuclease Inhibitor	553	694	IPR032675	-
	Arst4g02977	1000	Gene3D	Ribonuclease Inhibitor	695	825	IPR032675	-
	Arst4g02977	1000	Gene3D	-	16	184	IPR035897	-
	Arst4g02977	1000	SUPERFAMILY	Toll/Interleukin receptor TIR domain	12	164	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g02977	Arst-Chr4	105246147	105250566	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst4g02977	29	825	WRKY Transcription Factor Family	AT4G12020	31.873	1.52e-98	340

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst4g02977	-		-	adu:107485461	2009.96