Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g02559 ATGGGTTATTCTGAAACCAATCAGCATGACGAAGAAGCATCCAAGATTCCAGCGTTGCCAACTGATGCACCTAATGATGCAGATGATGTGAAATTGAGGTCTAGGGACCAAAGAGAGGCTCTCCTGGGTGAGCCAAAGTGTATCATATGTGGCCGTTATGGTGAGTATATCTGTGATGAAACTGACGATGATGTTTGCAGTTTGGAATGCAAACAATTACTACTAGGCAGAATCGCCAAATCCTTGCCTCCTGTTGGAGGAGTTCTTCAGCCGCCTAAAAAACTACCTGCAGCTGACGAGTGCTTTTATGTTAGAGAGAATGATTGTGAATCAGGAACTTTATCTTTAGCTAGAGATCAGGTTGAATTGCTTAGAAAGAAGCTTGAAATTCATGTGAAGGGTGATGTAGTGGCGCCGGTTTTGTCATTTGCTTCATGCAGTCTCCCTGACAAGCTCCTCCACAATGTAGAAGCAGCGGGGTATGAAATGCCTACCCCTGTTCAGATGCAAGCAATCCCTGCCGCTTTGACGGGAAATAGCACGCTTGTTCTGGCTGAAACAGGATCTGGAAAGTCTGCTTCGTTTCTTATTCCAATAATTTCTCGATGTGCAAGTCATCGCCTTGTATTTACTCCAGATAAGAAGCCTTTAGCGATGGTGTTAACACCTACTAGAGAGCTTTCTATACAGGTTGAAGAGCATGCAAAGTTGCTCGGAAAGGGGTTACCATTTAAAACTGCCCTTGTGGTTGGTGGTGAGGCCATGGCTAGACAACTCTATCGCTTTCAGCAAGGAGTTGAACTGATTGTGGGAACACCAGGAAGGCTTGTCGATCTTTTAACAAAGCATGAGATCGACTTAGATAACGTGATGACTTTAGTTTTGGATGAAGTTGATTGCATGCTTCAAAGGGGTTTCAGAGATCAGGTCATACAGATATACAGGGCTCTGTCACAACCTCAGGTCTTGATGTATTCTGCAACAATGTCTCATGATTTAGAGAAGATGGCAAACTCTCTTGCGAATGGTGTGTCGGTTATCTCTGTTGGGAAGGTGAATAGCCCAAATAAGGCTGTGAAGCAGGTCGCTATTTGGGTTGAGTCAAAGCAAAAGAAGCAGAAGCTGTTTGACATATTACTGAGTAGGCAACATTTTAAGCCACCGGCTGTAGTGTATGTGGACTCCCGACTTGGAGCAGATCTTCTGGCAAATGCAATAAAAGTTGCCACAGGAATTTCAGCTAATTCAATTCATGGAGAGAAGTCCATGAAGGAAAGGAGAGAAATAATGCAGTCACTTTTGGTTGGTGAGGTTCCGGTGGTTGTGGCTACTGGAGTTTTGGGTAGGGGAGTTGACCTATTGGGTGTGAGGCAGGTAATTGTGTTTGACATGCCAAATTCTATTAAGGAGTACATACATCAGATTGGAAGGGCATCTAGGATGGGAGGGGAAGGTGAAGCCATAGTTTTTGTGAATGAGGAGAGCAAGAATGTCTTTCCAGATTTAGTTGATGTATTAAAATCTGGTGGAGCAGCTGTTCCCCGGGAGCTTGCCAATTCACGGTATACCACTGGATTTTTTCCTGGTGGCAAGGGTTCAAAAAAGCGAAAGCATAGATAA 1620 0.442 MGYSETNQHDEEASKIPALPTDAPNDADDVKLRSRDQREALLGEPKCIICGRYGEYICDETDDDVCSLECKQLLLGRIAKSLPPVGGVLQPPKKLPAADECFYVRENDCESGTLSLARDQVELLRKKLEIHVKGDVVAPVLSFASCSLPDKLLHNVEAAGYEMPTPVQMQAIPAALTGNSTLVLAETGSGKSASFLIPIISRCASHRLVFTPDKKPLAMVLTPTRELSIQVEEHAKLLGKGLPFKTALVVGGEAMARQLYRFQQGVELIVGTPGRLVDLLTKHEIDLDNVMTLVLDEVDCMLQRGFRDQVIQIYRALSQPQVLMYSATMSHDLEKMANSLANGVSVISVGKVNSPNKAVKQVAIWVESKQKKQKLFDILLSRQHFKPPAVVYVDSRLGADLLANAIKVATGISANSIHGEKSMKERREIMQSLLVGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYIHQIGRASRMGGEGEAIVFVNEESKNVFPDLVDVLKSGGAAVPRELANSRYTTGFFPGGKGSKKRKHR 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g02559 539 Gene3D - 26 82 - -
Arst4g02559 539 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 141 169 IPR014014 GO:0003724
Arst4g02559 539 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 134 515 - -
Arst4g02559 539 SMART ultradead3 160 362 IPR014001 -
Arst4g02559 539 Pfam DEAD/DEAH box helicase 165 335 IPR011545 GO:0003676|GO:0005524
Arst4g02559 539 MobiDBLite consensus disorder prediction 1 29 - -
Arst4g02559 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 348 IPR027417 -
Arst4g02559 539 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 521 IPR001650 -
Arst4g02559 539 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 172 347 IPR014001 -
Arst4g02559 539 Gene3D - 349 523 IPR027417 -
Arst4g02559 539 FunFam DEAD-box ATP-dependent RNA helicase 41 27 84 - -
Arst4g02559 539 Gene3D - 109 348 IPR027417 -
Arst4g02559 539 SMART helicmild6 400 482 IPR001650 -
Arst4g02559 539 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 287 495 IPR027417 -
Arst4g02559 539 Pfam Helicase conserved C-terminal domain 373 482 IPR001650 -
Arst4g02559 539 Pfam HIT zinc finger 45 71 IPR007529 -
Arst4g02559 539 CDD SF2_C_DEAD 359 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g02559 Arst-Chr4 93077475 93081027 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g02559 135 519 Eukaryotic Initiation Factors Gene Family AT3G19760 29.231 1.71e-56 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g02559 K19466 - gmx:100781473 811.601