Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g02551 ATGGAAATGTCTTCGAGCCCTCGCACCGTTGAAGAGATCTTCAAGGACTACAGCGCTCGTAGAACCGCTGTTGTTCGTGCACTCACTCAAGATGTTGATGAATTTTACGGCCTCTGTGATCCAGACAAGGAGAACTTGTGCCTTTATGGACATCCAAATGAATCATGGGAAGTAACTCTGCCAGCAGAGGAGGTTCCACCAGAGCTTCCTGAGCCAGCGCTTGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTTTGGTTGCGGTTCACAGTGACTCGTGGCTGCTTTCTGTGGCCTTCTATCTTGGAGCTCGTCTTAACCGCAATGAGAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTTTTTGAGGTTGTGACTGACAGAAAACCAAGCAAGGACAAGCCCACTGTGGATAGTGGGAGCAAATCTCGGGGAAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAACCCAAAGTTTGCAGATGAGGGTTACGAAGAGGATGAAGATGAGCACAGCGAAACCCTCTGTGGTAGCTGTGGTGGAAATTACAACGCAGATGAATTCTGGATTGGCTGTGATATTTGTGAGAGATGGTTCCATGGGAAATGTGTGAAGATTACCCCGGCAAAGGCTGAGAGCATAAAGCAATACAAATGCCCATCATGCAACATGAGGCGGGGCAGGCCCTAG 720 0.4833 MEMSSSPRTVEEIFKDYSARRTAVVRALTQDVDEFYGLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPSKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCNMRRGRP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g02551 239 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Arst4g02551 239 CDD PHD_AL_plant 185 235 IPR044104 -
Arst4g02551 239 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Arst4g02551 239 FunFam PHD finger alfin-like protein 178 234 - -
Arst4g02551 239 MobiDBLite consensus disorder prediction 134 176 - -
Arst4g02551 239 SUPERFAMILY FYVE/PHD zinc finger 174 237 IPR011011 -
Arst4g02551 239 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 233 IPR013083 -
Arst4g02551 239 PANTHER CPG BINDING PROTEIN 6 238 IPR045104 GO:0006355|GO:0042393
Arst4g02551 239 MobiDBLite consensus disorder prediction 148 165 - -
Arst4g02551 239 SMART PHD_3 185 233 IPR001965 -
Arst4g02551 239 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Arst4g02551 239 Pfam PHD-finger 186 233 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g02551 Arst-Chr4 92332072 92336243 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g02551 4 238 Alfin-like Transcription Factor Family AT5G05610 77.119 3.68e-121 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Arst4g02551 Alfin 6e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g02551 K26274 - gmx:100793126 462.225