Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst4g02546 | ATGGCCGAACTTCATTCCACTTCAAATTCAACTCTAACTCCTCCTCCATCTACTTCCGCGGGTAACAATGAATCTTCTGGAGCTTCACCATCGACTTCCCGAGGCCGTCGCAACGATCAGAACGCCGCTGACCGATCTCAGGCTCGATTCCGGTCGCCTGAAATTGAACCGATCGTTGGCCATGCTGGCAGAGTCATTGGCTGGGGAATCGGGGACGAGTCGTCGTCTGTTAGGGAAGATGCATGGTCATGCTTTGCTGTTGTATTCACGTTTTGGTTTTTCGTGTCAGTGACTATAATACTTGGGGTTTATGGGTCCATGAATCTCTTGCTTGGTCCAGAAACATCGATTGTGTTCCAACCTAGCCCTCTGTTCGTGCAATATCTCAGGGTAGAAAACTTAGAAGAAAAGCCAGGTCCTGTCGTGTATGGTACTTACCAATATCCAGATCTTGATGTTATTACCACTTGGGAACAAACTCTGCATGCAACTATTCCCTCTGACACACATCAGGAATGGATTTATTATCTGAATACTGGTTCAGAAGTGAATATTTCATATCACTTGAGCCCTGTGAGCTCCTCCGTTCTCCTTATAATTGCAGATGGGGCTGAAAGCCTCGCTCAGTGGATTGAATACCCTACATACCGTAATTCAACTCTCTCATGGAACATGATCCATGGTATGACAAAGGTAAAGATAAATTTTATACTCATATTAAACCTATGTTTGATGCTCATTTATTTTTTCACAGGAGCTGATCTACAGAGAACGAGTTCTGTGAAAGTGGAACTAAACCTCACAGTTAGGGCCTACTTGCACAATACAAAGAATGCTTACTACAAATATGCCTTGGCAAGTAGAAGTTCGTGCAGTTTGAGCATTTTCTTTCCACAAGGAAACGCAGCTATCTTGACTACTCCTGGTCCACAAAAGAATGCATCAGATGATGAATGGTACGTCAAAGTGACCTATGGACCTAGATGGATCACATATATTGTAGGCATAGGTGGATTGACTTTGCTTATGTTTTGGGCATTCAACCTCTTGAACAATCTCCAGTTTGCCCGTGAAGAAAGAGCAGGAGTTATAAACAATGGGACGGCACCTGATAGAGGCCCTTTGCGCTCTCGAAAAGATGATGACCTTTCCAGCTGGGGTTCATCATATGATTCACTGTCACAAGATGACGAAGATCTTGACTCTCAGGCCGGAGGTTCCGCGGAGGGGAAGTCTCTAGGTGATGGAGAAATTAGTAACAATACTCGGCGTCTCTGTGCCATTTGCTTTGATGCTCCGAGGGATTGTTTCTTTCTTCCTTGTGGGCACTCTGCAGCTTGTTTTGAATGTGGAACTAGGATCGCCGAGGCTGCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAAGTGAGAAAGATTTTTACTGTTTGA | 1434 | 0.447 | MAELHSTSNSTLTPPPSTSAGNNESSGASPSTSRGRRNDQNAADRSQARFRSPEIEPIVGHAGRVIGWGIGDESSSVREDAWSCFAVVFTFWFFVSVTIILGVYGSMNLLLGPETSIVFQPSPLFVQYLRVENLEEKPGPVVYGTYQYPDLDVITTWEQTLHATIPSDTHQEWIYYLNTGSEVNISYHLSPVSSSVLLIIADGAESLAQWIEYPTYRNSTLSWNMIHGMTKVKINFILILNLCLMLIYFFTGADLQRTSSVKVELNLTVRAYLHNTKNAYYKYALASRSSCSLSIFFPQGNAAILTTPGPQKNASDDEWYVKVTYGPRWITYIVGIGGLTLLMFWAFNLLNNLQFAREERAGVINNGTAPDRGPLRSRKDDDLSSWGSSYDSLSQDDEDLDSQAGGSAEGKSLGDGEISNNTRRLCAICFDAPRDCFFLPCGHSAACFECGTRIAEAAGTCPVCRRNMKKVRKIFTV | 477 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst4g02546 | 477 | SMART | ring_2 | 426 | 464 | IPR001841 | - | |
| Arst4g02546 | 477 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Arst4g02546 | 477 | ProSiteProfiles | Zinc finger RING-type profile. | 426 | 465 | IPR001841 | - | |
| Arst4g02546 | 477 | MobiDBLite | consensus disorder prediction | 366 | 415 | - | - | |
| Arst4g02546 | 477 | FunFam | E3 ubiquitin-protein ligase APD2 | 415 | 476 | - | - | |
| Arst4g02546 | 477 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 409 | 477 | IPR013083 | - | |
| Arst4g02546 | 477 | PANTHER | OS05G0521000 PROTEIN | 73 | 477 | - | - | |
| Arst4g02546 | 477 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Arst4g02546 | 477 | SUPERFAMILY | RING/U-box | 425 | 471 | - | - | |
| Arst4g02546 | 477 | Pfam | Zinc finger, C3HC4 type (RING finger) | 423 | 471 | - | - | |
| Arst4g02546 | 477 | Pfam | Domain of unknown function (DUF4793) | 248 | 345 | IPR032010 | - | |
| Arst4g02546 | 477 | Pfam | Domain of unknown function (DUF4792) | 139 | 207 | IPR032008 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst4g02546 | Arst-Chr4 | 92215792 | 92221372 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst4g02546 | 399 | 474 | C3H Transcription Factor Family | AT3G06140 | 27.632 | 5.17e-06 | 46.6 |