Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g02336 ATGTTGAATCGTCGTGGTGGTGAAGAAGATGAGTTATATGAACAACTATGGGAAGCATGTGCAGGACCCCATGTGGATGTTCCTCGTTCTGGTCAAAGAGTGTTCTATTTTCCACAGGGACATATGGAGCAATTAGAAGAATCAACAAATCAGGAACTAAATCAGAGGATTCCAGTGTTCAAACTTCCCACTAAGATCCTTTGTCGTGTCGTCAACGTCCATTTGCTGGCTGAACAAGAAACGGATGAGGTTTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGCTGAGCCGACGAGCCCTGATTTGTGCCCCGCCGAGCTTCCAAGGCCACAAAATCACTCCTTTTGCAAGGTCTTAACTGCCTCCGATACCAGCACTCATGGCGGTTTCTCGGTTCTCAGAAAGCATGCCACCGAATGCCTTCCAGCTTTGGACATGTCTCAGCCAACCCCAACTCAGGAACTGGTCGCCAAGGATCTTCATGGTTACGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGCAGGCACTTGATCACAACTGGATGGAGTACTTTTGTAGCTTCGAAGAGATTAGTCGCCGGAGACACCTTTGTGTTTCTGAGAGGACACAACGGAGAGTTACGTGTTGGACTGAGGCGTAATACTCCTCAGCCGAGCAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCATCTTGGAGTACTCGCAACTGCATCTCATGCTGTTGCAACTCAAACTCTTTTTGTTGTATATTACAAGCCAAGGAGGTGCCAGTTCATTGTTGGCTTGAACAAGTATTTAGAGGCTATGAACCACAAGTTTGCTGTTGCTATGAGATTCAAGATGAGGTTCGAGGGTGAAGATACCCCTGAAAATGAGAGAAGATTTTCTGGGACAATAGTTGGAGTAGAGGATATTTCTCCTTATTGGGTAAATTCGAATTGGAGATCGCTTAAGGTTCTATGGGATGAACCTGCATCTGTTCCAAGACCTGATAGGGTCTCACCTTGGGAAATAGAGCCCCTTATGGCTTCTGTTGTTACTTCTTCACTTCAATCTCCTGTTTTAAAGAATAAAAGGCCTCGGCTACCTGGTGAAGTTCATGAACTTGACACAAGATCGGCTGCTTCGACTTTCTGGGATGCTGCGTTGGCACATTCAGATGTAACGCAACTTAGCGTTATTGCTGAAAGCAATATGAGTGATGGTACCCATGTGTGGAATCACAAGCTGATTGACAACAGTAAAGGAAGCTACAATGCTATGTTGAGGATTCAGACCGAAGCAATTCGGGTTTCTTCTCCCCATTCAAGTGGCCCATCTCAATTATTTCAGGACACAACATTTGATGATGGCAAGAGGTTAAACAACAATGATCATTTGCTTGATCAAGTAGACAAGGAGCACAAAATGGAGACGGCTACGAGCTGTCGATTGTTTGGAATCGAGCTTATTGATCATGCCAAGAACTCTCCTGCTGTAGAGAAGGCATCATCCATAGCGAATGCATCCGGAGTTACCAATGAGGGCTCTGTTAATACCATGTCCCGAACTGATGCAGACCAAAACTCTGATATAGTTAAGACTTCGAACAAAGAGCGAAAGCACGAAGAGCCGCAACAAGTATCCAAAAGAGAAACTCAAAGCAAGCAAATCTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCTGTGGGGCGCGCCATAGACTTGACCATGTTGGAAGGGTATGATCAACTTGTTGAAGAACTGGAGAAGTTGTTTGATATAAAGGGAGAGCTCCAACACAGAAATACGTGGCAAATTGTCTTCACTGATGACGAAGGTGATATGATGCTTGTTGGCGATGATCCATGGCCTGAATTCTGCAATATGGTGAGAAGAATCTTCATCTGTTCCAGCCAGGACGTGAAGAAAATGAGCTCTGTGAGGACCAAACTACCCCTCTCTTTAACAGAAGAGGAAACTGTAATAAGCTCAGACACAGCTGGGACCTGA 2019 0.4517 MLNRRGGEEDELYEQLWEACAGPHVDVPRSGQRVFYFPQGHMEQLEESTNQELNQRIPVFKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQAEPTSPDLCPAELPRPQNHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLITTGWSTFVASKRLVAGDTFVFLRGHNGELRVGLRRNTPQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRRCQFIVGLNKYLEAMNHKFAVAMRFKMRFEGEDTPENERRFSGTIVGVEDISPYWVNSNWRSLKVLWDEPASVPRPDRVSPWEIEPLMASVVTSSLQSPVLKNKRPRLPGEVHELDTRSAASTFWDAALAHSDVTQLSVIAESNMSDGTHVWNHKLIDNSKGSYNAMLRIQTEAIRVSSPHSSGPSQLFQDTTFDDGKRLNNNDHLLDQVDKEHKMETATSCRLFGIELIDHAKNSPAVEKASSIANASGVTNEGSVNTMSRTDADQNSDIVKTSNKERKHEEPQQVSKRETQSKQICSRSCTKVQMQGVAVGRAIDLTMLEGYDQLVEELEKLFDIKGELQHRNTWQIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSSVRTKLPLSLTEEETVISSDTAGT 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g02336 672 Gene3D - 278 352 - -
Arst4g02336 672 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 648 IPR044835 GO:0003677|GO:0006355|GO:0009725
Arst4g02336 672 SUPERFAMILY CAD & PB1 domains 563 636 - -
Arst4g02336 672 MobiDBLite consensus disorder prediction 510 530 - -
Arst4g02336 672 SMART B3_2 117 219 IPR003340 GO:0003677
Arst4g02336 672 FunFam Auxin response factor 278 351 - -
Arst4g02336 672 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Arst4g02336 672 Pfam AUX/IAA family 537 644 IPR033389 -
Arst4g02336 672 CDD B3_DNA 115 217 IPR003340 GO:0003677
Arst4g02336 672 MobiDBLite consensus disorder prediction 531 549 - -
Arst4g02336 672 SUPERFAMILY DNA-binding pseudobarrel domain 109 246 IPR015300 -
Arst4g02336 672 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Arst4g02336 672 ProSiteProfiles PB1 domain profile. 560 641 IPR000270 GO:0005515
Arst4g02336 672 FunFam Auxin response factor 555 648 - -
Arst4g02336 672 Pfam Auxin response factor 243 324 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Arst4g02336 672 MobiDBLite consensus disorder prediction 510 554 - -
Arst4g02336 672 Gene3D - 114 219 IPR015300 -
Arst4g02336 672 Gene3D - 556 648 - -
Arst4g02336 672 FunFam Auxin response factor 115 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g02336 Arst-Chr4 81571885 81576705 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g02336 2 648 B3 DNA Binding Superfamily AT4G23980 57.798 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Arst4g02336 B3 1.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g02336 K14486 - gmx:100779003 983.015