Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g02335 ATGTTGAATCGTCGTGGTGGTGAAGAAGATGAGTTATATGAACAACTATGGGAAGCATGTGCAGGACCCCATGTGGATGTTCCTCGTTCTGGTCAAAGAGTGTTCTATTTTCCACAGGGACATATGGAGCAATTAGAAGAATCAACAAATCAGGAACTAAATCAGAGGATTCCAGTGTTCAAACTTCCCACTAAGATCCTTTGTCGTGTCGTCAACGTCCATTTGCTGGCTGAACAAGAAACGGATGAGGTTTATGCACAGATTACTTTGGTGCCAGAATCTAATCAAGCTGAGCCGACGAGCCCTGATTTGTGCCCCGCCGAGCTTCCAAGGCCACAAAATCACTCCTTTTGCAAGGTCTTAACTGCCTCCGATACCAGCACTCATGGCGGTTTCTCGGTTCTCAGAAAGCATGCCACCGAATGCCTTCCAGCTTTGGACATGTCTCAGCCAACCCCAACTCAGGAACTGGTCGCCAAGGATCTTCATGGTTACGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGCAGGCACTTGATCACAACTGGATGGAGTACTTTTGTAGCTTCGAAGAGATTAGTCGCCGGAGACACCTTTGTGTTTCTGAGAGGACACAACGGAGAGTTACGTGTTGGACTGAGGCGTAATACTCCTCAGCCGAGCAGCATGCCTTCATCTGTGATTTCCAGTCAGAGCATGCATCTTGGAGTACTCGCAACTGCATCTCATGCTGTTGCAACTCAAACTCTTTTTGTTGTATATTACAAGCCAAGGTGCCAGTTCATTGTTGGCTTGAACAAGTATTTAGAGGCTATGAACCACAAGTTTGCTGTTGCTATGAGATTCAAGATGAGGTTCGAGGGTGAAGATACCCCTGAAAATGAGAGAAGATTTTCTGGGACAATAGTTGGAGTAGAGGATATTTCTCCTTATTGGGTAAATTCGAATTGGAGATCGCTTAAGGTTCTATGGGATGAACCTGCATCTGTTCCAAGACCTGATAGGGTCTCACCTTGGGAAATAGAGCCCCTTATGGCTTCTGTTGTTACTTCTTCACTTCAATCTCCTGTTTTAAAGAATAAAAGGCCTCGGCTACCTGGTGAAGTTCATGAACTTGACACAAGATCGGCTGCTTCGACTTTCTGGGATGCTGCGTTGGCACATTCAGATGTAACGCAACTTAGCGTTATTGCTGAAAGCAATATGAGTGATGGTACCCATGTGTGGAATCACAAGCTGATTGACAACAGTAAAGGAAGCTACAATGCTATGTTGAGGATTCAGACCGAAGCAATTCGGGTTTCTTCTCCCCATTCAAGTGGCCCATCTCAATTATTTCAGGACACAACATTTGATGATGGCAAGAGGTTAAACAACAATGATCATTTGCTTGATCAAGTAGACAAGGAGCACAAAATGGAGACGGCTACGAGCTGTCGATTGTTTGGAATCGAGCTTATTGATCATGCCAAGAACTCTCCTGCTGTAGAGAAGGCATCATCCATAGCGAATGCATCCGGAGTTACCAATGAGGGCTCTGTTAATACCATGTCCCGAACTGATGCAGACCAAAACTCTGATATAGTTAAGACTTCGAACAAAGAGCGAAAGCACGAAGAGCCGCAACAAGTATCCAAAAGAGAAACTCAAAGCAAGCAAATCTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCTGTGGGGCGCGCCATAGACTTGACCATGTTGGAAGGGTATGATCAACTTGTTGAAGAACTGGAGAAGTTGTTTGATATAAAGGGAGAGCTCCAACACAGAAATACGTGGCAAATTGTCTTCACTGATGACGAAGGTGATATGATGCTTGTTGGCGATGATCCATGGCCTGAATTCTGCAATATGGTGAGAAGAATCTTCATCTGTTCCAGCCAGGACGTGAAGAAAATGAGCTCTGTGAGGACCAAACTACCCCTCTCTTTAACAGAAGAGGAAACTGTAATAAGCTCAGACACAGCTGGGACCTGA 2016 0.4514 MLNRRGGEEDELYEQLWEACAGPHVDVPRSGQRVFYFPQGHMEQLEESTNQELNQRIPVFKLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQAEPTSPDLCPAELPRPQNHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLITTGWSTFVASKRLVAGDTFVFLRGHNGELRVGLRRNTPQPSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRCQFIVGLNKYLEAMNHKFAVAMRFKMRFEGEDTPENERRFSGTIVGVEDISPYWVNSNWRSLKVLWDEPASVPRPDRVSPWEIEPLMASVVTSSLQSPVLKNKRPRLPGEVHELDTRSAASTFWDAALAHSDVTQLSVIAESNMSDGTHVWNHKLIDNSKGSYNAMLRIQTEAIRVSSPHSSGPSQLFQDTTFDDGKRLNNNDHLLDQVDKEHKMETATSCRLFGIELIDHAKNSPAVEKASSIANASGVTNEGSVNTMSRTDADQNSDIVKTSNKERKHEEPQQVSKRETQSKQICSRSCTKVQMQGVAVGRAIDLTMLEGYDQLVEELEKLFDIKGELQHRNTWQIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVKKMSSVRTKLPLSLTEEETVISSDTAGT 671
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g02335 671 Gene3D - 114 219 IPR015300 -
Arst4g02335 671 MobiDBLite consensus disorder prediction 509 553 - -
Arst4g02335 671 SMART B3_2 117 219 IPR003340 GO:0003677
Arst4g02335 671 ProSiteProfiles PB1 domain profile. 559 640 IPR000270 GO:0005515
Arst4g02335 671 Pfam AUX/IAA family 536 643 IPR033389 -
Arst4g02335 671 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Arst4g02335 671 FunFam Auxin response factor 554 647 - -
Arst4g02335 671 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Arst4g02335 671 CDD B3_DNA 115 217 IPR003340 GO:0003677
Arst4g02335 671 SUPERFAMILY DNA-binding pseudobarrel domain 109 246 IPR015300 -
Arst4g02335 671 MobiDBLite consensus disorder prediction 509 529 - -
Arst4g02335 671 MobiDBLite consensus disorder prediction 530 548 - -
Arst4g02335 671 Pfam Auxin response factor 243 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Arst4g02335 671 FunFam Auxin response factor 277 350 - -
Arst4g02335 671 Gene3D - 277 351 - -
Arst4g02335 671 SUPERFAMILY CAD & PB1 domains 562 635 - -
Arst4g02335 671 Gene3D - 555 647 - -
Arst4g02335 671 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 647 IPR044835 GO:0003677|GO:0006355|GO:0009725
Arst4g02335 671 FunFam Auxin response factor 115 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g02335 Arst-Chr4 81571885 81576706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g02335 2 647 B3 DNA Binding Superfamily AT4G23980 57.798 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Arst4g02335 B3 1.3e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g02335 K14486 - gmx:100779003 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g02335 4 81571885 81576706 Arst2g02289 2 74632327 74637260 PCT