Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g02300 ATGAAAGGAATATCCTATCGGGGTAATCATATTTGCTTCGGAAGATATGCTCTTCAGGCACTTGAACCCGCTTGGATCACATCTAGACAAATAGAAGCAGGTCGGCGGGCAATGTCACGAAATGTCCGCCGAGGTGGACAAATATGGGTACGGATATTTCCAGACAAACCAGTTACAGTAAGACCAACCGAAACGCGTATGGGTTCGGGAAAGGGATCTCCCGAATATTGGGTAGCTGTCGTTAAACCCGCCGATAACAGCGGAGCCCGCCAATTGATGTGTATTCGAATCATAGGAGCAGGTAATCGACGATATGCTTCTATTGGTGACATTGTTGTTGCTGTAATCAAGGAAGCGGTACCAAATATGTCTTTAGAAAGATCAGAAGTGATTAGAGCTGTAATTGTACGTACTTGTAAAGAACTTAAACGTAGCAATGGCATGATAATACAATATGATGATAATGCCGCGGTTGTCATTGATCAAGAGGGAAATCCAAAAGGAACTCGAATTTTTGGCGCAATCGCCCGGGAATTGAGACAGTTAAATTTCACTAAAATAGTTTCATTAGCACCTGAGGTATTATAA 588 0.4269 MKGISYRGNHICFGRYALQALEPAWITSRQIEAGRRAMSRNVRRGGQIWVRIFPDKPVTVRPTETRMGSGKGSPEYWVAVVKPADNSGARQLMCIRIIGAGNRRYASIGDIVVAVIKEAVPNMSLERSEVIRAVIVRTCKELKRSNGMIIQYDDNAAVVIDQEGNPKGTRIFGAIARELRQLNFTKIVSLAPEVL 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g02300 195 FunFam 50S ribosomal protein L14, chloroplastic 77 195 - -
Arst4g02300 195 CDD Ribosomal_L16_L10e 7 83 IPR016180 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 Gene3D Ribosomal protein L10e/L16 1 81 IPR036920 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 SUPERFAMILY Ribosomal protein L14 78 195 IPR036853 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 NCBIfam 50S ribosomal protein L16 1 83 IPR000114 GO:0003735|GO:0006412|GO:0019843
Arst4g02300 195 SMART Ribosomal_L14_2 79 195 IPR000218 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 Pfam Ribosomal protein L16p/L10e 2 83 IPR016180 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 ProSitePatterns Ribosomal protein L16 signature 1. 43 54 IPR020798 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 Pfam Ribosomal protein L14p/L23e 80 195 IPR000218 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 Hamap 50S ribosomal protein L14 [rplN]. 60 195 IPR000218 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 ProSitePatterns Ribosomal protein L16 signature 2. 66 77 IPR020798 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 SUPERFAMILY Ribosomal protein L16p/L10e 1 83 IPR036920 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 79 194 IPR000218 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 ProSitePatterns Ribosomal protein L14 signature. 133 159 IPR019972 -
Arst4g02300 195 Gene3D Ribosomal protein L14 82 195 IPR036853 GO:0003735|GO:0005840|GO:0006412
Arst4g02300 195 NCBIfam 50S ribosomal protein L14 81 195 IPR005745 GO:0003735|GO:0006412|GO:0015934
Arst4g02300 195 PRINTS Ribosomal protein L16 signature 42 71 IPR000114 GO:0003735|GO:0006412|GO:0019843
Arst4g02300 195 PRINTS Ribosomal protein L16 signature 26 37 IPR000114 GO:0003735|GO:0006412|GO:0019843
Arst4g02300 195 PRINTS Ribosomal protein L16 signature 8 20 IPR000114 GO:0003735|GO:0006412|GO:0019843
Arst4g02300 195 PRINTS Ribosomal protein L16 signature 72 101 IPR000114 GO:0003735|GO:0006412|GO:0019843
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g02300 Arst-Chr4 78943085 78943947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g02300 79 195 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 35.537 1.10e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g02300 K02874 - mtr:120580175 328.176