Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g02294 ATGCCTCCTTCATTTGATATGATTTATAAGATGCATCCTCCTAGAGAGGCTTGGAGGCTAAAAGTTAAGGTTCTAAGGCTTTGGGTTGTACCATCTTTTGGGAATCATGAGGTTTCTAACTCAATGAAGATGATTCTTCTTGATGAGCATTGTGAAAAAATTCAAGCTACAGTTAAGAAACCACTCCTTAATAGGTTTAGGGATCATATAGTTGAAGGTCAAGTTTATAGAATGGCATACTTTACTGTTGTGTCAAATCATGGTAGTTATAGAGCAACTTCTCATGAATTCAAACTGGTTTTCCTTCACCAAACCACTGTTGTAGCTGTTGATGAAGATGTTATCCCTAAGACTTGTTTAAACATGTTGTATTTATTTGGAATAGATGTCATTGGCCTTTTAACTTCAGTGGAAGAAGAGAAAGAATATACAAAAGAGGGAAAATTTCTTACAGCGAGATGTGCATTGTTTGGGGACTATGTTAATCAAGTAAATCATTTTCTTGCCTCTGGCTATGTGGAGCAGCCTGTTGTAGTCATTCAACTTGCAAAAGTCAAGTTCTTTTGGGGTCAAGTAGGCCTTCAAAATGTGATGTATGCCACTCAAATGTTATTTAATCATGATCTTCCTAAAGTTGTTGAATTCAGGAAGAGTATGGTTGAGCAAGGTGTCAATGGTACCCAGCCACTGTTTATTGCAAATGAGGGTAAAGTTGTCTCCTTGGAAGATGATTTCATGCGTTTTACTAAAAAATGCACTATTGAAGAGCTTCAAGATAACAATCAGGGTTCTTTTATCATTTTTGGTACAATCCGAGGTATTGTTGAGGATGGAGGTTGGTGGGATTCTGCTTGTGTGTATGGAAAGGGTATCTATCCTCAAAATGGTGCATATTACTGTGATTTTTGTTTGAAGCACATAACTAATGTGACTCCAAGATTTAAAATTAAAATAACAGTTGAAGATCATAGTGGGGAGGATATTTTCCTTCTCTTTGATCGTGAGGCATCTTATTTGCTTAAGAAATCATGTGTTGACTTATTTACTGAGGTTCAAAGAGATGCAAGTCTTGTATGTGGGGATACTTATCCTCCCATATTCCAAGGGCTCATTGGAAAGAAGTTACTGCTGAAGGTTGATACCAAAGGTGTCCCACATGATACATTTTATAGCACTTTTCGAGTTAAGAGAATATGTGATGATCCCACCATTATTGCCATGTTTGAACTTCTTGATTATGATGCTGATGACGAGTCTACTCCAAAAATGGAGCTTGATTTACACAAGTCTGTTCCCTGTGGAAAAAGAAATATTGGTATTAAGAAGGAGTCATCAAAGACTTTTATCAAGAGTGAGAAAGTTGCTGGTGAGTCTTCTAGGATTTTATCTAAATCCCTAGTTCTTATAGATTTTCTGGCTGTTGCTGTTTTTGGAGGGACTGAGTTTGTTGCGTTAATTAATGGTGAAGATGAAAAAGATGAGATAACACCCAGCAATGATACTATTAGTGATGATCTTTCTGCTGAAATAGATATATTGCTTAGCTCACCAGAAAAAAAACTCAAGTGA 1569 0.3658 MPPSFDMIYKMHPPREAWRLKVKVLRLWVVPSFGNHEVSNSMKMILLDEHCEKIQATVKKPLLNRFRDHIVEGQVYRMAYFTVVSNHGSYRATSHEFKLVFLHQTTVVAVDEDVIPKTCLNMLYLFGIDVIGLLTSVEEEKEYTKEGKFLTARCALFGDYVNQVNHFLASGYVEQPVVVIQLAKVKFFWGQVGLQNVMYATQMLFNHDLPKVVEFRKSMVEQGVNGTQPLFIANEGKVVSLEDDFMRFTKKCTIEELQDNNQGSFIIFGTIRGIVEDGGWWDSACVYGKGIYPQNGAYYCDFCLKHITNVTPRFKIKITVEDHSGEDIFLLFDREASYLLKKSCVDLFTEVQRDASLVCGDTYPPIFQGLIGKKLLLKVDTKGVPHDTFYSTFRVKRICDDPTIIAMFELLDYDADDESTPKMELDLHKSVPCGKRNIGIKKESSKTFIKSEKVAGESSRILSKSLVLIDFLAVAVFGGTEFVALINGEDEKDEITPSNDTISDDLSAEIDILLSSPEKKLK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g02294 522 Gene3D - 7 112 IPR012340 -
Arst4g02294 522 CDD RPA1_DBD_A_like 19 107 - -
Arst4g02294 522 Gene3D - 243 402 IPR012340 -
Arst4g02294 522 Pfam Domain of unknown function DUF223 44 111 IPR003871 -
Arst4g02294 522 CDD RPA1_DBD_B_like 129 219 - -
Arst4g02294 522 SUPERFAMILY Nucleic acid-binding proteins 128 219 IPR012340 -
Arst4g02294 522 SUPERFAMILY Nucleic acid-binding proteins 4 112 IPR012340 -
Arst4g02294 522 Gene3D - 117 224 IPR012340 -
Arst4g02294 522 SUPERFAMILY Nucleic acid-binding proteins 249 397 IPR012340 -
Arst4g02294 522 CDD RPA1_DBD_C 254 382 IPR047192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g02294 Arst-Chr4 78093240 78095833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g02294 8 347 Core DNA Replication Machinery Family AT5G08020 20.479 4.37e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g02294 - - ahf:112744598 767.303