Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g02171 ATGAACCTGGAAATGAAAGATAGGCAACGGTGGAGAGCCGAAGAGGATGCTTTATTGCGTGCTTATGTCAAACAGTATGGTCCGAGGGAATGGAATCTTGTGTCTCAGCGCATGAACCAACCTCTTAATAGGGATGCCAAGTCATGTCTAGAAAGGTGGAAGAACTACCTTAAGCCCGGAATTAAGAAAGGATCTCTAACCGAGGAAGAGCAGCGCCTTGTCATCAACCTCCAAGCAACACATGGGAACAAGTGGAAGAAAATTGCTGCAGAAATCCCTGGTCGCACTGCCAAGAGGTTAGGGAAGTGGTGGGAAGTTTTCAAAGAGAAGCAGCAAAGAGAGGCCAAGGTAATTAACAAAGGCGTTGACCCAATCGACGATACCAAATACGAGCACATACTAGAGAGTTTTGCAGAGAAACTAGTGAAGGAGCGCCCTTCGCCACCATCCTTCGCCATGGTTGCTGCCAGTGGTTCTTTTCTGCATAATGATGCATCGGCCCCCTCGCCGACTTTGCTTCCTTCTTGGCTCTCCAATTCAAATAGCACCACAACTGTGAGGCCACCATCCCCTTCCGTGACACTAAGTCTTTCTTCCTCGACAGTGGCTGCTTCTCCTCCGTGGTTGCAACCCCCAAGAGGTCCGGAGAACGCTTCTCTAGTCTTGGGGAATGTAGCACCTCACGGATCAGTTGTAGCTTTTGGCGATAACATGGTGGTATCTGAGTTGGTGGAGTGCTGCAAGGAGTTGGGAGAAGTGCATCATGCTTTGGCAGGGCATAAGAAGGAGGCAGCCTGGCGGTTAAGTAGGGTAGAACTGCAGTTGGAGTCGGAGAAGGCATGTCGAAGAAGGGAGAAGATGGAGGAAATCGAATCGAAGATTAAGGCTCTTAGGGAAGAGCAGGCGGCTGCATTGGAGAGGATTGAAGCTGAATACAAGGAGCAGTTGGCTGTGTTAAGAAGAGATGCGGAAGCCAAGGAGCAGAAGTTGGCTGAGCAATGGGCTGCGAAACACTTGCGCGTTACCAAGTTTCTAGAACAAATGGGATGCTGGTCCAGGCTTTCTGAGACAAATGGAAGATAG 1083 0.4968 MNLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNQPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAEIPGRTAKRLGKWWEVFKEKQQREAKVINKGVDPIDDTKYEHILESFAEKLVKERPSPPSFAMVAASGSFLHNDASAPSPTLLPSWLSNSNSTTTVRPPSPSVTLSLSSSTVAASPPWLQPPRGPENASLVLGNVAPHGSVVAFGDNMVVSELVECCKELGEVHHALAGHKKEAAWRLSRVELQLESEKACRRREKMEEIESKIKALREEQAAALERIEAEYKEQLAVLRRDAEAKEQKLAEQWAAKHLRVTKFLEQMGCWSRLSETNGR 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g02171 360 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 5 356 - -
Arst4g02171 360 Pfam Myb-like DNA-binding domain 11 71 - -
Arst4g02171 360 ProSiteProfiles Myb-like domain profile. 3 57 IPR001005 -
Arst4g02171 360 SUPERFAMILY Homeodomain-like 8 102 IPR009057 -
Arst4g02171 360 CDD SANT 10 57 IPR001005 -
Arst4g02171 360 FunFam MYB-related transcription factor 8 62 - -
Arst4g02171 360 Gene3D - 8 62 - -
Arst4g02171 360 CDD SANT 67 108 IPR001005 -
Arst4g02171 360 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Arst4g02171 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Arst4g02171 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 57 IPR017930 -
Arst4g02171 360 SMART sant 7 59 IPR001005 -
Arst4g02171 360 SMART sant 62 110 IPR001005 -
Arst4g02171 360 Gene3D - 66 124 - -
Arst4g02171 360 Coils Coil 287 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g02171 Arst-Chr4 69884314 69886962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g02171 5 350 MYB Transcription Factor Family AT2G37630 65.659 1.46e-157 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst4g02171 Myb_DNA-bind_6 3.8e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g02171 4 69884314 69886962 Arst4g02171 4 69884314 69886962 ECH