Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g02098 ATGGAGGTTCAGTCTCTGCGATGCTTCATCTCCCTCTGCGTTCTGCTCGCGCTGCTTTCAATTGGCGCCAATGCAAGCAACTACAACGAGAAACAGATCACAGAATCAAGCAATGTAGGAGAAGCGAATTCGCAGAGCTTGGAGAATTCTCCAATGGCGAAAAGGTCAGATAATGATGATTCATCAAATTTGCATGCAGTTGATAATCCAGAGGAGATAGCTTCCATGGTTGATATGAGCATCCGCAATCACACGGTAAGAAGGAATCTGAACTTCTTCTCATGTGGGACCGGGAACCCAATAGACGACTGCTGGCGCTGCGACCGCCGCTGGTACCTCCGACGCAAGCGCCTCGCCACCTGCGCCATTGGCTTCGGCCGCAACGCCATTGGAGGCCGCGACGGCCGGTACTATGTCGTCACGGACCCATCCGACGACGACGCCGTGAACCCGAAGCCCGGCACCCTCCGCTATGCCGTGATCCAAGACAGGCCTCTCTGGATCGTGTTCAAGCGCGACATGATCATCACACTCAAGCAAGAGCTCATCATGAACAGCTTCAAGACAATCGACGGCCGCGGCTTCAACGTCCATATCGCCCACGGTGCCTGCATCACCGTCCAGTTCGTCACCAACATTATCATCCACGGCATCCACATCCACGACTGCATCCAAACCGGTAACGCCATGGTTCGCAGCTCTCCTTCGCATTACGGCTGGAGAACCCTCGCTGACGGTGATGGCATCTCTATCTTCGGCGCCAGCCATATCTGGATTGACCATAACTCCCTGTCTAATTGCTCTGATGGGCTTATTGATGCCATTATGGGATCTACTGCCATTACAATTTCTAACAACTACTTCACTCACCACAATGAGGTTATGTTACTGGGCCATAGTGATTCTTATGTAAGAGACAAGCAGATGCAAGTCACCATTGCTTATAACCATTTTGGGGAGGGTCTAGTCCAAAGGATGCCAAGGTGTAGACATGGATATTTTCACGTGGTAAACAATGATTATACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCCGATCCCACAATTAACAGCCAAGGCAATAGATACCTTGCCCCTCTGGATCATTTTGCTAAGGAGGTGACAAAGAGAGTATTAACAACAGAATCCACATGGAAAAAATGGAATTGGAGGTCTGATGGAGACCTTATGTTGAATGGTGCCTATTTCACTTCATCAGGAGCAGGAAATGCAGCTAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCTTCTTCTTTGGTTGGAACTCTTACGTCTGCTGCTGGTGTTCTTAACTGCCGGAGGGGTTTCATGTGTTAA 1344 0.4993 MEVQSLRCFISLCVLLALLSIGANASNYNEKQITESSNVGEANSQSLENSPMAKRSDNDDSSNLHAVDNPEEIASMVDMSIRNHTVRRNLNFFSCGTGNPIDDCWRCDRRWYLRRKRLATCAIGFGRNAIGGRDGRYYVVTDPSDDDAVNPKPGTLRYAVIQDRPLWIVFKRDMIITLKQELIMNSFKTIDGRGFNVHIAHGACITVQFVTNIIIHGIHIHDCIQTGNAMVRSSPSHYGWRTLADGDGISIFGASHIWIDHNSLSNCSDGLIDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPLDHFAKEVTKRVLTTESTWKKWNWRSDGDLMLNGAYFTSSGAGNAASYARASSLGAKSSSLVGTLTSAAGVLNCRRGFMC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g02098 447 MobiDBLite consensus disorder prediction 34 52 - -
Arst4g02098 447 PANTHER PECTATE LYASE 18-RELATED 69 444 IPR045032 GO:0030570
Arst4g02098 447 SMART amb_all 173 370 IPR002022 -
Arst4g02098 447 MobiDBLite consensus disorder prediction 34 66 - -
Arst4g02098 447 FunFam Pectate lyase 98 440 - -
Arst4g02098 447 Pfam Pectate lyase 183 362 IPR002022 -
Arst4g02098 447 SUPERFAMILY Pectin lyase-like 76 442 IPR011050 -
Arst4g02098 447 PRINTS Pollen allergen Amb family signature 145 170 IPR018082 -
Arst4g02098 447 PRINTS Pollen allergen Amb family signature 245 266 IPR018082 -
Arst4g02098 447 PRINTS Pollen allergen Amb family signature 389 413 IPR018082 -
Arst4g02098 447 PRINTS Pollen allergen Amb family signature 325 344 IPR018082 -
Arst4g02098 447 PRINTS Pollen allergen Amb family signature 181 197 IPR018082 -
Arst4g02098 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Arst4g02098 447 PRINTS Pollen allergen Amb family signature 347 366 IPR018082 -
Arst4g02098 447 PRINTS Pollen allergen Amb family signature 121 138 IPR018082 -
Arst4g02098 447 Gene3D - 98 440 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g02098 Arst-Chr4 63993289 63999896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g02098 28 447 Polysaccharide Lyase AT4G13710 73.944 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g02098 K01728 - gmx:100809277 754.977