Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01780 ATGAAAGAGGGTGGTAGGAAGCAGGGTTCAGCCTCACCTTGTGCTGCATGCAAGCTTCTCCGCCGAAGGTGCGCCGCGGATTGCGTCTTTGCGCCGTATTTCCCGGCCGACGAGCCTCACAAGTTTGCAAATGTGCATAAGGTCTTTGGTGCCAGCAATGTCAACAAGATGCTTCAGGGGATTGGTAGATTATCACTCATCCGTCGTTATAACACTAGTAATGACTTATATGAGCTACCAGAGCATCAGAGAGGAGATGCAGTGAGCAGCATGGTGTATGAGGCAAATGCAAGAGTGAGGGACCCTGTTTATGGCTGTGTGGGAGCCATCTCTTCTCTTCAACAACAAATTGATGCGTTGCAAATCCAATTGGCTGTGGCTCAGGCTGAGGCTGTGCATCTCAGGGTGCGCCAGACCCAGACTGCATCCTGCTCTTACTGGACCCAACCCCATAGCCCAACCAATAGTGCCTCCCCATCCTCCAAGCCCATTTTTGACATCGACATGGGCCTTGACCATACCTCTTATGCAGATTCTATGTGGTCATGA 549 0.5118 MKEGGRKQGSASPCAACKLLRRRCAADCVFAPYFPADEPHKFANVHKVFGASNVNKMLQGIGRLSLIRRYNTSNDLYELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQIQLAVAQAEAVHLRVRQTQTASCSYWTQPHSPTNSASPSSKPIFDIDMGLDHTSYADSMWS 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01780 182 ProSiteProfiles LOB domain profile. 12 131 IPR004883 -
Arst4g01780 182 Pfam Lateral organ boundaries (LOB) domain 13 128 IPR004883 -
Arst4g01780 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 152 - -
Arst4g01780 182 Coils Coil 110 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01780 Arst-Chr4 31141114 31145445 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01780 1 182 AS2 family AT1G31320 62.963 1.07e-66 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Arst4g01780 LOB 1.6e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01780 - - vum:124847068 229.95