Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01767 ATTCCCTCAATCCCTGCCGCTCCGGCACTTCCACCGCCGCCGGTCCTCCCCGACGACCCAGCGCACCACCAGCCTGCACTCGTCGGCGTCCAGTCGACGGTGATAGAGGAGTACGACCCCGCCAGGCCCAACGACTACGAGGAGTATCGCCGCGAGCGGAAGCGAAAGGCGAGGGAGGCGGAGATGATGCGTGAGCTGGAGCGGCGGCGCCAGGAGGAGGAGGAGAGAGAGAGGAGAGAGAGGGAGGAGAGAGAAAGAGAGAGGGAGCGGGAGCGGGATTACGGCGATTCCAGGTTGAATATTTCCGGCGAGGAAGCGTGGAGGAGGCGTGCTGCCATGAGTAGTGGAGGTGGCAGCGGTGGTGGTGGGGGCGCTGTTCCGCGATCGCCGTCGCCACCAGGGAATTCGGATGGTTTTACCATTGGGAAGTCGGAGACTGGTGGGTTGGGGCTGGGGGCAGGCGGGCAGATGACGGCGGCGCAGAGGATGATGGCGAAAATGGGGTGGAAGGAAGGACAGGGGCTTGGGAAGCAAGAACAAGGAATCACTACTCCATTGATGGCAAGGAAAACTGATAGAAGAGCTGGTGTTATTGTGAATGCCAGTGAGAACAGTAGTAATAAGCCTGAGAAGAAGGTGAAGAGTGTTAACTTCCATGGGGTTCCTACTAGGGTGCTCCTACTTAGGAACATGGTGGGTCCTGGTGAGGTAGATGATGAACTAGAAGAGGAGGTAGGATCAGAATGTGCCAAGTATGGAACTGTAACTCGGGTTTTGATATTCGAGATAACAGAGCCAAATTTCCCTACTGATGAAGCAGTAAGAATTTTCGTGCAATTTGAGAGATCAGAGGAAACAACCAAAGCTTTAATTGACCTTAATGGTCGGTACTTTGGAGGTAGAGTGGTGCAGGCCTCATTTTATGACGAGGAGAAGTTCGGCAAGAATGAGTTAGCTCCAATGCCAGGAGAAATTCCTGGTTTTTCCTGA 990 0.5485 MLGGLYGDLPPPSSAEEEKPTTNSTVWSTSTKMAPATLRKPATVSAPPVTLLRSQSKPKPLPTPSSSKIPSIPAAPALPPPPVLPDDPAHHQPALVGVQSTVIEEYDPARPNDYEEYRRERKRKAREAEMMRELERRRQEEEERERREREERERERERERDYGDSRLNISGEEAWRRRAAMSSGGGSGGGGGAVPRSPSPPGNSDGFTIGKSETGGLGLGAGGQMTAAQRMMAKMGWKEGQGLGKQEQGITTPLMARKTDRRAGVIVNASENSSNKPEKKVKSVNFHGVPTRVLLLRNMVGPGEVDDELEEEVGSECAKYGTVTRVLIFEITEPNFPTDEAVRIFVQFERSEETTKALIDLNGRYFGGRVVQASFYDEEKFGKNELAPMPGEIPGFS 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01767 397 SUPERFAMILY RNA-binding domain, RBD 293 380 IPR035979 GO:0003676
Arst4g01767 397 PIRSF SPF45 3 393 IPR040052 GO:0045292
Arst4g01767 397 MobiDBLite consensus disorder prediction 108 173 - -
Arst4g01767 397 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 378 IPR000504 GO:0003723
Arst4g01767 397 MobiDBLite consensus disorder prediction 63 88 - -
Arst4g01767 397 PANTHER SPLICING FACTOR 45 SPF45 1 388 IPR040052 GO:0045292
Arst4g01767 397 MobiDBLite consensus disorder prediction 16 36 - -
Arst4g01767 397 FunFam Putative splicing factor 45 291 377 - -
Arst4g01767 397 Coils Coil 114 160 - -
Arst4g01767 397 SMART rrm2_1 293 374 IPR003954 GO:0003676
Arst4g01767 397 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 318 371 IPR000504 GO:0003723
Arst4g01767 397 Gene3D - 288 386 IPR012677 -
Arst4g01767 397 MobiDBLite consensus disorder prediction 1 223 - -
Arst4g01767 397 Pfam G-patch domain 227 266 IPR000467 GO:0003676
Arst4g01767 397 MobiDBLite consensus disorder prediction 48 62 - -
Arst4g01767 397 CDD RRM_UHM_SPF45 290 386 IPR034653 -
Arst4g01767 397 ProSiteProfiles G-patch domain profile. 224 270 IPR000467 GO:0003676
Arst4g01767 397 SMART G-patch_5 222 268 IPR000467 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01767 230 265 C2H2 Transcription Factor Family AT5G26610 61.111 1.33e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01767 K12840 - qsa:O6P43_013116 471.085