Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01748 ATGGCGACGGAGCAAACCAAGTTCAGCGTTATGTGCAGCCTCTTCAACTGGACGCAGCGTGCCAAGTCGCCGGCCAAGAAGCGCGCAAAGTTCCGCAAGTTCCTCGACTCATTCTGCGCCGACCGCAACTTCTTCCCTGCCATTCGCCTTGTCCTCCCAAACCTCGACCGCGAGCGCGGCTCCTACGGCCTCAAGGAGTCAGTCCTCGCCATTTCCCTCATCGACGCCCTCGGCATGTCTCGCGACTCCGAAGACGCCCTTCGCCTCATTAATTGGCGCAAGGGCGGCGCCAAGACCGGCGCCAATGCCGGCAATTTCGCCCTCGTCGCCACCGAGGTACTGCAGCGCAGGCAAGGTACTGCTTCGGGTGGATTGACGATAAAGGAGGTAAATGACTTGCTTGATCAGTTGGCTGCTAGTGAAAACAGGGCCGAGAAGACTCAGGTTCTTTCTACCTTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAGTCCTCAAAGATCTGAAGCTAGGAATTAGTGAAAAAAGCATTTTTCATGAATTCCATCCTGATGCTGAAGACTTATTTAATGTTACATGTGACTTAAAATTAGTGTGTGAAAAACTAAGGGATCGGAATCAGCGTCATAAGCGACAGGATATTGAAGTTGGAAAAGCTGTGCGTCCTCAGCTAGCTAAGAGAGTTGCTAATGCAGCTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTCGAGTGCAAATTTGATGGTGACCGCATTCAAATTCACAAAAATGGAACAGAGATACATTTCTTCTCGAGGAACTTCCTTGATCATTCAGAATATGCACATGCAATGTCAGAAATCATACAGCAAAACATTTTGGTAGATAGGTGCATACTTGATGGTGAAATGTTGGTTTGGGACAGTTCCTTGAATCGTTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGGGATGGACTTGACAGTGACAGACAGAGAATTTATATCTAAAATGCCTTGACTTCAGATTGGCTAGATGTTGCATTTGATATCCTTTATTTTGGAGATACTAGTGTAATTCACCAAACTTTGAAGGAACGACATGAGATTCTCCGTAAAGTTGTGAGGCCATTGAAGGGGCGCCTTGAAATTTTAGTACCTAATGGTGGTCTTAATAGTCATTGCTCTTCTGGTGAACCATGTTGGTCATTCATTGCTCATAATGTGGACGAAGTTGAGAAATTTTTCAAAGAAACTATAGAGAACAGAGATGAGGGAATAGTTATCAAAGACCTCGGTTCTAAATGGGAGCCTAGTGATCGAAGTGGAAAGTGGCTAAAATTGAAGCCTGAGTACATTCAAGCTGGCACTGATCTGGATGTGCTTATCATAGGAGGTTATTATGGCTCTGGACGACGTGGAGGGGAGGTTGCTCAGTTCTTGGTGGGCCTTGCTGAGCGTCCATCCCCAAATACACATCCCAAGCGCATTCATAGAACTAGTACAGTCCAGCAATGGAACTACTCAGAGGGATACAGAAACCAAGCAGGGTGGCAAATCAAATCGTATAAGGTCCTCCATAAGGGGAGAAAAGAAAAACATGTCCATTGTTCCTTCTCATTTAACTCAGACTGATGTTTCCAGTATCAAGGGAGACTCTCGTATATTTTCAAATATGATGTTTTACTTCGTTAATGTGCCTCCATCTCATTCTCTTGAGAGCTTGCACAAAATGATTGCAGAGAATGGGGGAGTTTTCTCAATGAACTTGAATAACTCTGTCACTCATCGTGTGGCGGCAGAGAGCAAGGGGTTTAAATTTGAAGCTGCAAAACGTCATGGTGATATCATTCACTACAGTTGGATATTAGATTGCTGCTCACAAAAGAAGCTTGTCCCCTTACAGCCAAAGTACTTCCTCTTCCTATCTGAAGTAACAAGGAAGAAGTTACAAGAAGAAATTGACGAGTTCTCTGACTCTTACTACATGTATATTGATCTTGGAGAGTTCAAACAGCTCTTAAACACTATTAATCGGTCAGAGGATATCAGTACTATTGATCATTACAGCAAAAAATACTGTCCAAAGGATGAGTGGTCTGTCTTTATTGGATGCTCCATATATTTCCACACTGCAATACCATCAGTGAAAGGGGACTGGAAAGTTCTATTGCAACTTGCTTTGAGAAGATTCAAGGTTGAAGTTCTCATGGGCGGTGGTAGAGTTACTGATAAACTTACTTGTGCAACCCATTTAGTTGTCTTGTCAGTTCCAGGATATGATGCCGAATTTGATGAGATACAGAGATGTTTTACTTCAGTGGATAGGAGGTTTCTCCAGAGCAAGAGGTTGCATATAATAAAATCCCATTGGTTTGAAGATTGTCTGGACAATAACAAAAGATTACCAGAAGAAAGTTACAGCTTGAGGCCCTCTGCAATAGAAGAGTCAACATCTGAAAATGGTGAAAATGACATCTTAGAGGCTCACTTTGGTGGAGACAATGTACAAGACCAGAATGTACCCTCTGAAAAGGAAAATAGACAGAGAAGTGCAAAAGCTGCTCATGAACACAGTTTGGCCACGGTGTCCCATGAGAATGTTGGCCCAAGGAAGAGAGGAAGACCTGCAGGGAGAGGTGTTAAAAATGTTAAGATGGCTGGCAACAAAGCCCAAAGAGCACGGCCACGCACTGTGAGAAAGCGTGCAAAAATAAGCGAGTATGAATCGGACAAAAGTGATTCTCATGACAATGAACCAGAAGAGCAGGAGGATGACACCGGAGAAGCAAGTTTTGATATTTACAATAGACATTTGGAACCTCAGGAGGTCGAGCAACAGGCCAATGTCCAAGTTGCTGAAACAGAAGAAAGTTCTGAACCAAACAGGGCAGTGCATGATTTGAGGAATAGTAGTGAGAGTGAAAGAATGTATGTTCCAGAAATAAAAATGGCAGATAGGACCAATGACCAAAACAGTGAATTGGCTAAAGAAATTGAAAATCGGGCTGATCCCATGTTATTTGACAAGATTCCGAGCCTTGCTACCGCCAAGAAAGTTGAGGACACTAAGCATTGTGATCTAAAAGAAGAGAGGCCAGCAGCAGCAGCAGAAAGCAGTAGCACCAATACTGCAGAACCTACAATCACTAAGAAAAAGAAAGTTAGCTACAAGGACGTTGCCAATGACCTGCTCAAAGATTGGTAG 3220 0.437 MATEQTKFSVMCSLFNWTQRAKSPAKKRAKFRKFLDSFCADRNFFPAIRLVLPNLDRERGSYGLKESVLAISLIDALGMSRDSEDALRLINWRKGGAKTGANAGNFALVATEVLQRRQGTASGGLTIKEVNDLLDQLAASENRAEKTQVLSTFIQKTNAQEMKWIIMIVLKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANAAEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFLDHSEYAHAMSEIIQQNILVDRCILDGEMLVWDSSLNRFAEFGSNQEIAKAARDGLDSDRQRIYIXNALTSDWLDVAFDILYFGDTSVIHQTLKERHEILRKVVRPLKGRLEILVPNGGLNSHCSSGEPCWSFIAHNVDEVEKFFKETIENRDEGIVIKDLGSKWEPSDRSGKWLKLKPEYIQAGTDLDVLIIGGYYGSGRRGGEVAQFLVGLAERPSPNTHPKRFISFCRVGTGLSDDELDALVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWYECLDVQSFIELVQSSNGTTQRDTETKQGGKSNRIRSSIRGEKKNMSIVPSHLTQTDVSSIKGDSRIFSNMMFYFVNVPPSHSLESLHKMIAENGGVFSMNLNNSVTHRVAAESKGFKFEAAKRHGDIIHYSWILDCCSQKKLVPLQPKYFLFLSEVTRKKLQEEIDEFSDSYYMYIDLGEFKQLLNTINRSEDISTIDHYSKKYCPKDEWSVFIGCSIYFHTAIPSVKGDWKVLLQLALRRFKVEVLMGGGRVTDKLTCATHLVVLSVPGYDAEFDEIQRCFTSVDRRFLQSKRLHIIKSHWFEDCLDNNKRLPEESYSLRPSAIEESTSENGENDILEAHFGGDNVQDQNVPSEKENRQRSAKAAHEHSLATVSHENVGPRKRGRPAGRGVKNVKMAGNKAQRARPRTVRKRAKISEYESDKSDSHDNEPEEQEDDTGEASFDIYNRHLEPQEVEQQANVQVAETEESSEPNRAVHDLRNSSESERMYVPEIKMADRTNDQNSELAKEIENRADPMLFDKIPSLATAKKVEDTKHCDLKEERPAAAAESSSTNTAEPTITKKKKVSYKDVANDLLKDW 1178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01748 1178 MobiDBLite consensus disorder prediction 1069 1111 - -
Arst4g01748 1178 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Arst4g01748 1178 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 454 - -
Arst4g01748 1178 PANTHER DNA LIGASE 4 4 1172 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Arst4g01748 1178 Pfam ATP dependent DNA ligase domain 227 453 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Arst4g01748 1178 SUPERFAMILY BRCT domain 801 922 IPR036420 -
Arst4g01748 1178 PANTHER DNA LIGASE 4 4 1172 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Arst4g01748 1178 FunFam DNA ligase 221 455 - -
Arst4g01748 1178 Gene3D - 456 617 IPR012340 -
Arst4g01748 1178 NCBIfam ATP-dependent DNA ligase 62 611 IPR000977 GO:0003910|GO:0005524|GO:0071897
Arst4g01748 1178 MobiDBLite consensus disorder prediction 917 1111 - -
Arst4g01748 1178 Gene3D DNA ligase/mRNA capping enzyme 221 455 - -
Arst4g01748 1178 MobiDBLite consensus disorder prediction 1011 1027 - -
Arst4g01748 1178 SUPERFAMILY BRCT domain 665 750 IPR036420 -
Arst4g01748 1178 MobiDBLite consensus disorder prediction 1146 1160 - -
Arst4g01748 1178 MobiDBLite consensus disorder prediction 951 965 - -
Arst4g01748 1178 ProSiteProfiles ATP-dependent DNA ligase family profile. 352 490 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Arst4g01748 1178 ProSitePatterns ATP-dependent DNA ligase signature 2. 429 453 IPR016059 GO:0003909
Arst4g01748 1178 Pfam DNA ligase N terminus 8 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Arst4g01748 1178 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 8 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Arst4g01748 1178 FunFam DNA ligase 456 617 - -
Arst4g01748 1178 Pfam ATP dependent DNA ligase C terminal region 477 596 IPR012309 GO:0003910|GO:0006281|GO:0006310
Arst4g01748 1178 MobiDBLite consensus disorder prediction 1132 1163 - -
Arst4g01748 1178 FunFam DNA ligase 2 219 - -
Arst4g01748 1178 FunFam DNA ligase 676 790 - -
Arst4g01748 1178 MobiDBLite consensus disorder prediction 1052 1068 - -
Arst4g01748 1178 Gene3D BRCT domain 675 789 IPR036420 -
Arst4g01748 1178 SMART BRCT_7 663 739 IPR001357 -
Arst4g01748 1178 SMART BRCT_7 816 909 IPR001357 -
Arst4g01748 1178 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Arst4g01748 1178 CDD OBF_DNA_ligase_IV 460 604 - -
Arst4g01748 1178 Gene3D BRCT domain 808 919 IPR036420 -
Arst4g01748 1178 FunFam DNA ligase 808 919 - -
Arst4g01748 1178 Pfam BRCT domain, a BRCA1 C-terminus domain 663 746 IPR001357 -
Arst4g01748 1178 ProSiteProfiles BRCT domain profile. 849 919 IPR001357 -
Arst4g01748 1178 Coils Coil 127 150 - -
Arst4g01748 1178 CDD BRCT_DNA_ligase_IV_rpt1 665 751 - -
Arst4g01748 1178 ProSiteProfiles BRCT domain profile. 661 749 IPR001357 -
Arst4g01748 1178 SUPERFAMILY Nucleic acid-binding proteins 461 612 IPR012340 -
Arst4g01748 1178 CDD Adenylation_DNA_ligase_IV 215 458 IPR044125 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01748 Arst-Chr4 29858188 29872148 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01748 215 613 Core DNA Replication Machinery Family AT1G08130 27.913 2.02e-30 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01748 K10777 - gmx:100816002 1794.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g01748 4 29858188 29872148 Arst4g01748 4 29858188 29872148 ECH