Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01701 ATGGATTCTTCTTCTTCTGGTTCCACATTCTACGACCTACCTCCCCTCAAGAGACTCAGATTACAACTCCAACAACAACAACAAAACACTCCCTTACCTGCCAAGAAGCGCAAAGATTCCCGAAACGCTGCGTTTTACGAAAACCTGAACCCAAATCCAATCCCTCCTTCCGCCACTGCTTATTCTTTACCCGCCAAGAAAAGAGTATGCGCTTTTCAACCCTTCCTCCCACAAAACGACGCCGTTTCACCCTTCCAAATCGACCTCAACCTCGAATACCAAGAAATCGACAAAAAGCTCCAATCTCTCCCCTCATCTCTCCAAAAGCGTCAAGAGCAATATCTTGACGGCAACGGTAACGTCAACGATTGCGATGATGTTGACGTTGACGTTGACGACGGGATTTTATGCTGTGTGTGCCAGAGCACAGACGGAGACCCTACGGATCCAATCGTATTTTGCGACGGTTGTGACCTAATGGTCCACGCTTCCTGCTACGGAAATCCGCTCTCAAAGTCAATCCCAGACGGAGACTGGTTCTGCGAACGGTGTCGTTTCAAAGACGAAGAAGCTGCTTCAGATGCATCCTCTGGTTCTTGCTGCTGCTGCTGCCTCTGTCCGGTGACCGAAGGCGCGATGAAGAAGACAACGGATAACCGTTGGGCTCACATCGTTTGCGCGCTGCTGGTGCCGGAGGTGTTCTTCTTGGATCCTGAAGGGAGAGAAGGAATCGATTGTTCTATGGTTCCGAAGAAGAGGTGGTTGGAGAGGTGCTATGTTTGTGATTCTTGTGATGGTTGTGCTGTTGTGTGCTCTGAGCCAAAGTGCGGTTTGGCGTTTCATGTTACTTGTGGGATTAAAGAGGAGCTTTGTATTGAGTATAAGCAAGGCAAGAAGGGTGCTACCATTGTTGCTGGCTTCTGCAAAACCCACACCCAAATTTGGGACAAGCAATCAGGGAAATACAAAATTGTTGCGGTTGAAGATGAAGTGTAG 996 0.4869 MDSSSSGSTFYDLPPLKRLRLQLQQQQQNTPLPAKKRKDSRNAAFYENLNPNPIPPSATAYSLPAKKRVCAFQPFLPQNDAVSPFQIDLNLEYQEIDKKLQSLPSSLQKRQEQYLDGNGNVNDCDDVDVDVDDGILCCVCQSTDGDPTDPIVFCDGCDLMVHASCYGNPLSKSIPDGDWFCERCRFKDEEAASDASSGSCCCCCLCPVTEGAMKKTTDNRWAHIVCALLVPEVFFLDPEGREGIDCSMVPKKRWLERCYVCDSCDGCAVVCSEPKCGLAFHVTCGIKEELCIEYKQGKKGATIVAGFCKTHTQIWDKQSGKYKIVAVEDEV 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01701 331 CDD PHD_BRPF_JADE_like 136 184 - -
Arst4g01701 331 ProSitePatterns Zinc finger PHD-type signature. 137 184 IPR019786 -
Arst4g01701 331 ProSiteProfiles Extended PHD (ePHD) domain profile. 200 312 IPR034732 -
Arst4g01701 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 192 IPR013083 -
Arst4g01701 331 SUPERFAMILY FYVE/PHD zinc finger 124 189 IPR011011 -
Arst4g01701 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 196 314 IPR013083 -
Arst4g01701 331 SMART PHD_3 257 312 IPR001965 -
Arst4g01701 331 SMART PHD_3 136 185 IPR001965 -
Arst4g01701 331 ProSiteProfiles Zinc finger PHD-type profile. 134 187 IPR019787 -
Arst4g01701 331 Pfam PHD-finger 137 186 IPR019787 -
Arst4g01701 331 PANTHER PHD FINGER PROTEINS 35 312 - -
Arst4g01701 331 Pfam PHD-zinc-finger like domain 203 311 - -
Arst4g01701 331 CDD ePHD 211 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01701 Arst-Chr4 28030072 28031610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01701 12 330 C2H2 Transcription Factor Family AT3G14740 51.183 4.23e-103 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Arst4g01701 zf-HC5HC2H_2 8.1e-25 CL0390