Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01524 ATGGCTAAACTTGAGTCTAATCACACTCCCCCACCCACAATGAGCCCTACCATAAGCAAACCATGTTACCCTCCACAATCTCCCAACAACAATTCAGGTGGCTTCAACTTAATGGTTATTTTGGCGGCAATTGTATGCGCCTTCCTTTGCGCGCTAGGCCTCAACACCATGCTACAATGCACGCTACAATGCGCGAGTCGCGTCCTCACGGAGCCTTTACAATGGATTGCTTCCAGAGGGATCAACTCAGGGCTCAAGAAGAAAGAAATGGTAGCTTTGCCAACTTCAATTTATAATAGGTCATCACCATCTTCAGGTTCTGCTAGTTGTGCAATTTGCCTAGCTGATTTCTCTGATGGAGACAAGATAAGGTTTCTTCCAAAGTGTAATCATCGTTTTCATGTGGCTTGCATTGATAAGTGGCTTCTTTCCCATTCCTCTTGCCCAACATGTAGGAACTTCCTCAAGTCCAATGATTCATCACACCCTTTTCATATTCTCATAGCTTAA 510 0.4451 MAKLESNHTPPPTMSPTISKPCYPPQSPNNNSGGFNLMVILAAIVCAFLCALGLNTMLQCTLQCASRVLTEPLQWIASRGINSGLKKKEMVALPTSIYNRSSPSSGSASCAICLADFSDGDKIRFLPKCNHRFHVACIDKWLLSHSSCPTCRNFLKSNDSSHPFHILIA 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01524 169 CDD RING-H2_EL5-like 110 152 - -
Arst4g01524 169 SUPERFAMILY RING/U-box 109 160 - -
Arst4g01524 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 162 IPR013083 -
Arst4g01524 169 SMART ring_2 110 151 IPR001841 -
Arst4g01524 169 Pfam Ring finger domain 109 152 IPR001841 -
Arst4g01524 169 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Arst4g01524 169 MobiDBLite consensus disorder prediction 1 23 - -
Arst4g01524 169 PANTHER RING-H2 FINGER PROTEIN ATL78 8 157 IPR044602 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01524 Arst-Chr4 20958342 20958896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01524 11 155 C3H Transcription Factor Family AT3G10910 41.176 1.00e-35 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01524 - - gmx:100803003 236.498