Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01454 ATGGTTGATAACATTGGAGGTAGTGGTTCTTCTAATAATGAAGGCATCATCAAGGAGCAAGATCGGTTGCTGCCAATAGCCAATGTTGGTAGGATCATGAAGCAGATTCTTCCTCAGAATGCGAAAATCTCGAAGGAGGCGAAGGAGACGATGCAGGAGTGCGTGTCGGAGTACATTAGCTTCGTGACGAGCGAGGCGTCGGAGAAATGCCGGAAGGAGAGGAGGAAGACTGTTAATGGTGATGACATTTGTTGGGCGCTCGCAACGCTCGGTTTTGATGACTATGCCGAAGGGATGAGAAGGTATTTACAAAGGTATAGAGAGTTAGAGGTTGATAATAATAATCAAGAGAGAGGGAAATAA 363 0.4573 MVDNIGGSGSSNNEGIIKEQDRLLPIANVGRIMKQILPQNAKISKEAKETMQECVSEYISFVTSEASEKCRKERRKTVNGDDICWALATLGFDDYAEGMRRYLQRYRELEVDNNNQERGK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01454 120 FunFam Nuclear transcription factor Y subunit B-6 12 120 - -
Arst4g01454 120 Coils Coil 99 119 - -
Arst4g01454 120 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Arst4g01454 120 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Arst4g01454 120 SUPERFAMILY Histone-fold 20 116 IPR009072 GO:0046982
Arst4g01454 120 Gene3D Histone, subunit A 13 120 IPR009072 GO:0046982
Arst4g01454 120 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Arst4g01454 120 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Arst4g01454 120 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Arst4g01454 120 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 12 114 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01454 Arst-Chr4 18569253 18569615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01454 16 117 CCAAT-HAP3 Transcription Factor Family AT2G47810 75.490 7.99e-57 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Arst4g01454 CBFD_NFYB_HMF 2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01454 K08065 - gmx:100794513 195.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g01454 4 18569253 18569615 Arst4g01454 4 18569253 18569615 ECH
Arst1g03448 1 95483554 95484097 Arst4g01454 4 18569253 18569615 PCT