Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01316 ATGGGGAGAACACCATGCTGTGAGAAAGTTGGGCTGAAGAAAGGAAGATGGACTGCTGAAGAGGATAAGATCTTGACCGATTATATCCAAGAGAATGGGGAAGGATCATGGAGGAACTTGCCCAAGAATGCAGGTTTGTTAAGGTGTGGAAAGAGTTGCAGGCTGAGGTGGATAAACTATTTGAGAGCAGATGTGAAGAGAGGGAACATCACTCCTCAAGAAGAAGAGATCATTGTCAAGTTGCATGCTGTTCTTGGTAATAGGTGGTCAGTGATAGCAGGACATTTACCTGGAAGAACAGACAATGAGATAAAGAACTATTGGAACTCTCATCTGAGAAGAAAGATTTACTGTTTCATGAGATCACTCAATGAATCTCTTCCTCCAATTGACATGGCTGCTCTCAATGAAGCTGCATCCAAGAGAAGAGCAGCACCTAGAAGATCATCAACAATTCAAGAAACCAACAAGACTTCATTGCCTAAAAGAGAAGCAATCACAACAAGTTCCCAAAATTGTTGCAACATTTTAGGAGATCATGATCATGATGATGATGATGGCAAGGGAATTTCAATGATGGATGCTTACTTCCAAATGGAGTTGGGGAACAACAATAATCCTAGTAGCTTCATGAATAACAATAATAATGGAGATTTTGATGAGGGTTTATTGGGAGCATATGAATGGCCAGATGAAGAAATCATGAGACTTACTCAAATGTTTGAAAATGGGGTGCTTGTCAATAATAATAATAATAATAACAATATAGCCCTTAAAGAGGAGCCTAATGGAAATTATTATTATGATGATGATGAGTGTGGCCAAATGATAGATATGGATATGGATTTGGATATGGATGTAATTGGAGCAACAAGAACAACAAGTGAAGAAGAAGAAGAAGAGAGCAAGAATCATAAGAATAATAATATTGCTGCCTCCATTAGTGAACATAATTATTGGTACAACAACAATAACAATGATAATAGTTGTTCATCATCCTCAGTTGGTGACTATCATCAGTGGCATGATTGGGATTTGGCTCATCAATCCAATAATAATAATAATAATCATCATCAATGGGATCTTTCTACTGAAGATGATCAAATGCTGATGATGAATTCCTTGTGGGGTACCACCACCAATGAGGTTAATAATACTACCTTTCATCATTATTATTAG 1179 0.374 MGRTPCCEKVGLKKGRWTAEEDKILTDYIQENGEGSWRNLPKNAGLLRCGKSCRLRWINYLRADVKRGNITPQEEEIIVKLHAVLGNRWSVIAGHLPGRTDNEIKNYWNSHLRRKIYCFMRSLNESLPPIDMAALNEAASKRRAAPRRSSTIQETNKTSLPKREAITTSSQNCCNILGDHDHDDDDGKGISMMDAYFQMELGNNNNPSSFMNNNNNGDFDEGLLGAYEWPDEEIMRLTQMFENGVLVNNNNNNNNIALKEEPNGNYYYDDDECGQMIDMDMDLDMDVIGATRTTSEEEEEESKNHKNNNIAASISEHNYWYNNNNNDNSCSSSSVGDYHQWHDWDLAHQSNNNNNNHHQWDLSTEDDQMLMMNSLWGTTTNEVNNTTFHHYY 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01316 392 Gene3D - 71 116 - -
Arst4g01316 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Arst4g01316 392 FunFam Myb transcription factor 71 116 - -
Arst4g01316 392 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Arst4g01316 392 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Arst4g01316 392 CDD SANT 16 61 IPR001005 -
Arst4g01316 392 Gene3D - 13 66 - -
Arst4g01316 392 MobiDBLite consensus disorder prediction 138 162 - -
Arst4g01316 392 FunFam Myb transcription factor 11 67 - -
Arst4g01316 392 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 194 - -
Arst4g01316 392 SMART sant 66 114 IPR001005 -
Arst4g01316 392 SMART sant 13 63 IPR001005 -
Arst4g01316 392 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Arst4g01316 392 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Arst4g01316 392 CDD SANT 71 112 IPR001005 -
Arst4g01316 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Arst4g01316 392 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01316 Arst-Chr4 14056863 14060964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01316 1 363 MYB Transcription Factor Family AT5G49330 41.039 2.71e-75 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Arst4g01316 Myb_DNA-binding 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01316 K09422 - gmx:100819041 367.081