Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01305 ATGGCACAAATAGCAATGCCCGTAGCTCCCTCTCTCGCCCTAATCTCAAACCCTAGACCTCTTTCCAGAGCCGTCTATTTCCCTGTTCTCAACCCTCCCAAGGCGAGAGGGTTAAGCATAGAGTGCGCTCGTGTTGGCGGAGTGGAGATTCCGAACAACAAGAGAATCGAGTTCTCGCTACAGTACATCCATGGAATCGGAAGGAGCAGAGCTCGCAAGATTCTCTGCGATATAAGCATGGACAACAAGGTCACTAAGGATCTCAGTGAAGAGGAACTCATCACTCTTAGAGATGAAGTCTCCAAATACGTCATTGAAGGGGATTTGAGGAGGTTTAATGCGCTGAATATAAGGAGATTGAAGGAGATTCAATGTTACAGAGGAATAAGGCATATTCAGGGGCTTCCTTGCCGAGGACAACGTACGAAGAACAATTGCCGGACCTTGAAGGGTAAGAAGGTTGCTATTGCTGGCAAGAAGAAGAAGTAA 489 0.4724 MAQIAMPVAPSLALISNPRPLSRAVYFPVLNPPKARGLSIECARVGGVEIPNNKRIEFSLQYIHGIGRSRARKILCDISMDNKVTKDLSEEELITLRDEVSKYVIEGDLRRFNALNIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKKK 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01305 162 FunFam 30S ribosomal protein S13 38 111 - -
Arst4g01305 162 FunFam 30S ribosomal protein S13 112 161 - -
Arst4g01305 162 Hamap 30S ribosomal protein S13 [rpsM]. 42 158 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Arst4g01305 162 Pfam Ribosomal protein S13/S18 44 148 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Arst4g01305 162 Gene3D - 43 111 - -
Arst4g01305 162 ProSiteProfiles Ribosomal protein S13 family profile. 45 151 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Arst4g01305 162 NCBIfam 30S ribosomal protein S13 44 153 IPR019980 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Arst4g01305 162 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 38 160 - -
Arst4g01305 162 Gene3D 30s ribosomal protein s13, domain 2 112 162 IPR027437 -
Arst4g01305 162 SUPERFAMILY S13-like H2TH domain 43 154 IPR010979 GO:0003676
Arst4g01305 162 ProSitePatterns Ribosomal protein S13 signature. 127 140 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01305 Arst-Chr4 13881323 13882186 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01305 44 160 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 32.867 2.96e-08 48.5