Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01249 ATGGCCTCAGCAAGCAGAGCAACAAACAGAGTTCCCCACCACCAACAAAACCAACACCAACAGCAACAACAACAACAGCACCCCACAGCATCTTCATCAAAACGCACTGTCGTACACAACACGAACGACGCGTCAATAAGCAAGGCCATAGCGCAGTACACAGAAGACGCCCGCCTCCACGCCGTTTTCGAGCAGTCCGGCGCCGTCGACGAGCCGTCCTTCCGCATCCTCGGATACTCCGAGAACGCTCGGGACATGCTCGGCATATCACCGCAGTCAGTCCCAACTCTCGAACGTCTCCCCGGATCCCACGAGGAGGCGCTCACAATTGGTACTGACGTGCGCAGTCTTTTCACCGCCTCCAGCAGCACCCTGCTAGAGAGGGCGTTTGGGGCGCGAGAGATCACGCTCCTCAACCCAATTTGGATCCATTCCCGGAATTCCGGCAAGCCTTTTTATGGAATCTTGCACCGAATCGATGTTGGAATCGTCATCGATTTGGAGCCTGCTAGGACTGAGGACCCTGCACTGTCAATTGCAGGGGCTGTTCAGTCCCAGAAGCTAGCTGTTCGAGCTATTTCGCAGCTTCAGTCGCTTCCCGGAGGCGATGTGAAGATTCTTTGTGACACTGTTGTGGAGAGTGTGAGAGAATTGACCGGTTATGATAGGGTGATGGTGTACAAATTTCATGAGGATGAGCATGGTGAGGTTGTTGCCGAGAGTAAGAGGCCTGATTTGGAGCCTTATATTGGTTTGCATTACCCTGCTACTGATATACCTCAGGCTTCGAGGTTCTTGTTCAAGCAGAATAGAGTTAGGATGATTGTAGATTGCAATGCTTCGCCATTGAGGGTGGTGCAGGATGAGGCCCTTGTGCAACCCTTGTGTTTGGTTGGCTCCACCCTGCGCGCACCACACGGTTGCCACGCTCAGTATATGGCGAATATGGGGTCGATTGCTTCGTTGGTTATGGCTGTTATCATCAATGCTAATGATGAGGAGGCTGTTGGCGGCCGCAGCTCAATGAGGCTGTGGGGATTGGTTGTTTGCCACCACACTTCGGCCAGGTGTATACCTTTTCCCTTGAGGTATGCTTGTGAATTCTTGATGCAGGCCTTTGGGCTGCAGCTGAATATGGAGCTTCAATTGGCTTCGCAGTCATTGGAGAAGCGAGTTTTGAGGACGCAAACTCTGTTGTGTGACATGCTTCTTAGGGACTCGCCCACTGGCATTGTTACTCAGAGTCCTAGTATTATGGATTTGGTGCGGTGTGATGGAGCAGCTTTGTACTACCAAGGAAACTACTATCCATTGGGTGTAACACCTACTGAATCTCAAATAAGGGATATTATAGAGTGGTTGTTGGCATACCATGGAGATTCCACGGGTTTGAGTACTGATAGTCTGGGTGATGCTGGGTATCCTGGTGCTGCCTCGCTTGGGGATGCTGTTTGTGGGATGGCTGTTGCATATATCACTGAAGGGGATTTTCTTTTCTGGTTTAGGTCTCACACAGCAAAAGAGATCAAATGGGGTGGTGCAAAGCATCATCCTGAGGATAAGGATGATGGGCAGAGAATGCATCCTCGTTCTTCGTTTAAGGCATTTTTGGAAGTGGTGAAAAGCCGGAGTTTGCCATGGGATAATGCAGAAATGGATGCGATTCACTCTTTGCAGCTTATTCTGCGAGACTCATTTAGAGATGCCGAGCATAGCAACTCAAAGGCTGTCATGCATTCGCATCTGGCGGATTTTGAGTTGCAAGGGGTAGATGAGTTAAGTTCTGTGGCGAGAGAAATGGTCAGATTGATAGAAACTGCCACTGCTCCCATATTCGCTGTTGACGTTGATGGCCGCATAAATGGGTGGAATGCAAAGGTTGCAGAATTGACAGGGCTTCCAGTCGACGAGGCTATGGGGAAGTCACTGGTTCATGATCTTGTGTACAAGGAGTTCGAAGAAACTGTAGACAAGCTTCTCTCTCGCGCTCTAAGAGGTGAAGAAGATAAGAATGTTGAGATAAAATTGAAGACATTTGGCCCAGAAAATCAAAATGGTGCAGTTTTTGTAGTGGTGAATGCTTGCTCCAGCAAGGATTATACAAATAATATAGTTGGAGTATGCTTTGTTGGTCAGGACGTTACTGGTCAGAAGGTTGTAATGGACAAATTCATCAACATACAAGGTGACTACAAGGCTATTGTACATAGCCCAAATCCATTGATCCCCCCAATTTTTGCATCGGATGATAACACTTGTTGCTTAGAGTGGAATGCAGCCATGGAAAAGCTTACTGGTTGGGGGCGTGCAGATGTAATTGGAAAGATGTTGGTTGGAGAGGTTTTTGGTAGTTGCTGTCAGTTAAAGGGCTCGGATGCTTTAACAAAGTTCATGATTGTGTTGCACAATTCCCTTGGTGGACAAGATACCGACAAGTTCCCTTTTTCATTTCTTGACCGGCATGGAAAATATGTGCAAGCTTTCTTGACTGCAAATAAGAGGGTTAACATGGATGGTCAGATTATTGGAGCTTTTTGCTTTTTGCAAATTGCGAGTCCTGATCTTCAACAGGCTCTGAAAATACAGAAGCAACAAGAGAAGAATTGCTATGCTAGGATGAAAGAGTTAGCCTATATTTGTCAAGAAATAAAGAATCCACTGAGTGGCATACGCTTTACAAACTCTCTTTTGGAGGCTACTGGATTGACCGATGAACAAAAGCAGTTTCTTGAGACTAGTACTGCATGTGAGAAGCAAATGTCAAAAATAATACAGGATGTTGACTTGGCAAGCATTGAAGATGGATCAATGGAGCTTGAAAAGGGAGAATTCTTGCTTGGAAACGTCATCAATGCTGTTGTTAGCCAAGTAATGTTATTACTAAGAGAGAGAAATTTACAGTTGATTCGTGATATACCTGAAGAAATCAAGACGTTGGCTGTTTATGGTGATCAGTTGAGGATTCAACAAGTCTTGGCTGATTTCTTATTGAATATGGTGCGCTATGCGCCTTCTCCAGATGGGTGGGTAGAGATTCATGTACATCCAAGAATAAAACAAATCTCCGACGGGCTTACTCTTCTCCGTGCTGAATTTAGGATGGTATGTCCTGGTGAAGGTGTTCCTCCTGAATTGGTTCAAGACATGTTCCATAGCAGTCGTTGGGTGACTCAAGAAGGCTTAGGTCTGAGCATGAGCCGGAAGATTCTAAAGTTAATGAATGGTGAAGTCCAATATATCAGGGAGGCAGAAAGATGCTATTTCTTCGTTCTTCTTGAACTACCTGTAACACGGAGAACTTACTCTAAAATCGTTAACTAG 3321 0.4634 MASASRATNRVPHHQQNQHQQQQQQQHPTASSSKRTVVHNTNDASISKAIAQYTEDARLHAVFEQSGEXVDEPSFRILGYSENARDMLGISPQSVPTLERLPGSHEEALTIGTDVRSLFTASSSTLLERAFGAREITLLNPIWIHSRNSGKPFYGILHRIDVGIVIDLEPARTEDPALSIAGAVQSQKLAVRAISQLQSLPGGDVKILCDTVVESVRELTGYDRVMVYKFHEDEHGEVVAESKRPDLEPYIGLHYPATDIPQASRFLFKQNRVRMIVDCNASPLRVVQDEALVQPLCLVGSTLRAPHGCHAQYMANMGSIASLVMAVIINANDEEAVGGRSSMRLWGLVVCHHTSARCIPFPLRYACEFLMQAFGLQLNMELQLASQSLEKRVLRTQTLLCDMLLRDSPTGIVTQSPSIMDLVRCDGAALYYQGNYYPLGVTPTESQIRDIIEWLLAYHGDSTGLSTDSLGDAGYPGAASLGDAVCGMAVAYITEGDFLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEVVKSRSLPWDNAEMDAIHSLQLILRDSFRDAEHSNSKAVMHSHLADFELQGVDELSSVAREMVRLIETATAPIFAVDVDGRINGWNAKVAELTGLPVDEAMGKSLVHDLVYKEFEETVDKLLSRALRGEEDKNVEIKLKTFGPENQNGAVFVVVNACSSKDYTNNIVGVCFVGQDVTGQKVVMDKFINIQGDYKAIVHSPNPLIPPIFASDDNTCCLEWNAAMEKLTGWGRADVIGKMLVGEVFGSCCQLKGSDALTKFMIVLHNSLGGQDTDKFPFSFLDRHGKYVQAFLTANKRVNMDGQIIGAFCFLQIASPDLQQALKIQKQQEKNCYARMKELAYICQEIKNPLSGIRFTNSLLEATGLTDEQKQFLETSTACEKQMSKIIQDVDLASIEDGSMELEKGEFLLGNVINAVVSQVMLLLRERNLQLIRDIPEEIKTLAVYGDQLRIQQVLADFLLNMVRYAPSPDGWVEIHVHPRIKQISDGLTLLRAEFRMVCPGEGVPPELVQDMFHSSRWVTQEGLGLSMSRKILKLMNGEVQYIREAERCYFFVLLELPVTRRTYSKIVN 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01249 1107 Gene3D - 853 935 - -
Arst4g01249 1107 Gene3D - 185 543 IPR029016 -
Arst4g01249 1107 Gene3D - 936 1101 IPR036890 -
Arst4g01249 1107 ProSiteProfiles Histidine kinase domain profile. 879 1099 IPR005467 -
Arst4g01249 1107 CDD PAS 608 715 IPR000014 -
Arst4g01249 1107 SUPERFAMILY PYP-like sensor domain (PAS domain) 604 712 IPR035965 -
Arst4g01249 1107 FunFam Phytochrome 853 934 - -
Arst4g01249 1107 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 984 1091 IPR003594 -
Arst4g01249 1107 ProSiteProfiles PAS repeat profile. 597 668 IPR000014 -
Arst4g01249 1107 SUPERFAMILY GAF domain-like 390 567 - -
Arst4g01249 1107 SUPERFAMILY PYP-like sensor domain (PAS domain) 70 172 IPR035965 -
Arst4g01249 1107 NCBIfam PAS domain S-box protein 604 719 IPR000014 -
Arst4g01249 1107 CDD HisKA 872 932 IPR003661 GO:0000155|GO:0007165
Arst4g01249 1107 Gene3D PAS domain 592 725 - -
Arst4g01249 1107 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 863 934 IPR036097 GO:0000155|GO:0007165
Arst4g01249 1107 MobiDBLite consensus disorder prediction 1 43 - -
Arst4g01249 1107 FunFam Phytochrome 387 517 - -
Arst4g01249 1107 CDD HATPase_Phy-like 983 1095 IPR044767 -
Arst4g01249 1107 ProSitePatterns Phytochrome chromophore attachment site signature. 304 313 IPR013516 -
Arst4g01249 1107 SMART pas_2 730 800 IPR000014 -
Arst4g01249 1107 SMART pas_2 599 666 IPR000014 -
Arst4g01249 1107 SMART pas_2 57 120 IPR000014 -
Arst4g01249 1107 FunFam Phytochrome 744 852 - -
Arst4g01249 1107 Pfam His Kinase A (phospho-acceptor) domain 876 936 IPR003661 GO:0000155|GO:0007165
Arst4g01249 1107 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 204 372 IPR016132 -
Arst4g01249 1107 Gene3D PAS domain 744 852 - -
Arst4g01249 1107 Pfam PAS fold 70 171 IPR013654 GO:0006355
Arst4g01249 1107 SMART gaf_1 204 392 IPR003018 GO:0005515
Arst4g01249 1107 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 947 1095 IPR036890 -
Arst4g01249 1107 SUPERFAMILY GAF domain-like 184 379 - -
Arst4g01249 1107 Pfam PAS fold 731 850 IPR013767 GO:0006355
Arst4g01249 1107 Pfam PAS fold 600 715 IPR013767 GO:0006355
Arst4g01249 1107 Gene3D PAS domain 70 307 - -
Arst4g01249 1107 PIRSF Phytochrome_conventional 22 71 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Arst4g01249 1107 PIRSF Phytochrome_conventional 68 1104 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Arst4g01249 1107 PIRSF Phytochrome_conventional 22 71 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Arst4g01249 1107 PIRSF Phytochrome_conventional 68 1104 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Arst4g01249 1107 Pfam Phytochrome region 395 568 IPR013515 GO:0006355|GO:0009584
Arst4g01249 1107 Gene3D - 387 560 IPR043150 -
Arst4g01249 1107 ProSiteProfiles PAS repeat profile. 731 783 IPR000014 -
Arst4g01249 1107 FunFam Phytochrome 593 725 - -
Arst4g01249 1107 FunFam Phytochrome 935 1101 - -
Arst4g01249 1107 SMART HKATPase_4 984 1099 IPR003594 -
Arst4g01249 1107 Pfam GAF domain 206 382 IPR003018 GO:0005515
Arst4g01249 1107 SUPERFAMILY PYP-like sensor domain (PAS domain) 745 848 IPR035965 -
Arst4g01249 1107 CDD PAS 742 850 IPR000014 -
Arst4g01249 1107 SMART HisKA_10 872 936 IPR003661 GO:0000155|GO:0007165
Arst4g01249 1107 PANTHER TWO-COMPONENT HISTIDINE KINASE 797 1096 - -
Arst4g01249 1107 PRINTS Phytochrome signature 600 616 IPR001294 GO:0006355|GO:0009584
Arst4g01249 1107 PRINTS Phytochrome signature 619 634 IPR001294 GO:0006355|GO:0009584
Arst4g01249 1107 PRINTS Phytochrome signature 412 432 IPR001294 GO:0006355|GO:0009584
Arst4g01249 1107 PRINTS Phytochrome signature 530 548 IPR001294 GO:0006355|GO:0009584
Arst4g01249 1107 PRINTS Phytochrome signature 497 516 IPR001294 GO:0006355|GO:0009584
Arst4g01249 1107 PRINTS Phytochrome signature 219 238 IPR001294 GO:0006355|GO:0009584
Arst4g01249 1107 PRINTS Phytochrome signature 304 325 IPR001294 GO:0006355|GO:0009584
Arst4g01249 1107 PRINTS Phytochrome signature 713 733 IPR001294 GO:0006355|GO:0009584
Arst4g01249 1107 PRINTS Phytochrome signature 119 141 IPR001294 GO:0006355|GO:0009584
Arst4g01249 1107 PRINTS Phytochrome signature 693 710 IPR001294 GO:0006355|GO:0009584
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01249 Arst-Chr4 12430755 12436665 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01249 4 1097 Histidine Kinase Gene Family AT4G16250 71.578 0.0 1694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01249 K12121 - gmx:100799831 1922.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g01249 4 12430755 12436665 Arst4g01249 4 12430755 12436665 ECH