Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01160 ATGGCACAATCTGTTGATGAGCAACTTCTTGTTATTGCTTTCAATGATAAGCCTGTGAAGAATTTGAAGGGCTTGGTCACCATGGTTGAGAACTGTGATGATGAGTTTCTAAAGTTTGATCTGGAATACCAACAGGATGTGACAGCAACTAAAAGAAATGAATTTGAGGATTATTTTTTGAAGCGAGAGTTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCAAGGGCTAAAAATGGGACAGGCAAAACAGCTGCATTTTACATTCCTGCATTGGAAAAAATTGACCAGAAACAATCTATCCTGGCATAG 372 0.3898 MAQSVDEQLLVIAFNDKPVKNLKGLVTMVENCDDEFLKFDLEYQQDVTATKRNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFYIPALEKIDQKQSILA 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01160 123 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 44 119 - -
Arst4g01160 123 Pfam DEAD/DEAH box helicase 78 116 IPR011545 GO:0003676|GO:0005524
Arst4g01160 123 Gene3D - 3 57 IPR046449 -
Arst4g01160 123 Pfam PDZ domain 8 47 IPR041517 -
Arst4g01160 123 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 117 IPR027417 -
Arst4g01160 123 Gene3D - 58 122 IPR027417 -
Arst4g01160 123 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 53 81 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01160 Arst-Chr4 10500762 10502742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01160 55 116 Eukaryotic Initiation Factors Gene Family AT5G11200 48.387 1.09e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01160 K12614 - adu:107483323 243.817