Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01134 ATGAAGAAAGTCATAGCAGCCAGAAGCCGAAAGCGTAAACAAGATCGCTCTTGCGAAAAAGAAGAACAAGTTCCTGATGATGATGAACCTGTATCAGTCAAAGCCTCAGGTAAGAAAGGTTCTTCTGCACAAGATAAGTCCTTCAGTTTTTTCCTTTCAGATCCAGACGTCCTTGATTGCCCCATTTGCTTTAATCCTCTCACCACTCCAGTCTATCAGTGTGAAAACGGTCATGTTGCTTGCTCTGCTTGCTGCTCGCGCATTCTTGAGAAAAAGTGTGCCTCCTGCTTCTTGTCAATAGGTTCCATTCGTAGCAGAGCCTTGGAGAAAGTTCTGGAATCTATTAAAGTTCCATGCGCTAATGCCGAATACGGTTGCACGGAAACACTTCGTTACAGTGACAAATCTGGCCATGAGTCCCAATGCAACTTTGTCCCATGCTCTTGTCCACACTCGGATTGTAACTTCGTTTCATCATTCTCGGATCTACCCGCTCACTATAGAACTGAGCATGGTTCCTCTGCTAGCGCCGGAGTGAGGTTTTCGTACGATAAGCCCTTCAAAGTCACACTGGATTCTGATGATGACGTCACTATACTTCAAGAAGTGAATGGTGAAAAGTTGTTCATAGTTCATAATTTTGTGGCGGGTCTTGGAAATGCTGTCAGTGTTTTCTGCATTCAGCCAGAGTTATTGCCTAACTATCGGTGCCAAATTTCAGCCAAGTCAAATGGATGCAGTCTGGAGATGAATTCTTTTACCAAAAACATTCAAAACTCTGCTATGGCCAGATTGGCCACTATTCTTTCATCAAGGTTTCTGGTCATTCCAACTGATTATTTTGGTGCCGGTCAACCTCGCAATTTTGAAATTTGTATATTTAGGTCATATGAGTAG 897 0.4326 MKKVIAARSRKRKQDRSCEKEEQVPDDDEPVSVKASGKKGSSAQDKSFSFFLSDPDVLDCPICFNPLTTPVYQCENGHVACSACCSRILEKKCASCFLSIGSIRSRALEKVLESIKVPCANAEYGCTETLRYSDKSGHESQCNFVPCSCPHSDCNFVSSFSDLPAHYRTEHGSSASAGVRFSYDKPFKVTLDSDDDVTILQEVNGEKLFIVHNFVAGLGNAVSVFCIQPELLPNYRCQISAKSNGCSLEMNSFTKNIQNSAMARLATILSSRFLVIPTDYFGAGQPRNFEICIFRSYE 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01134 298 SUPERFAMILY TRAF domain-like 114 282 - -
Arst4g01134 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 166 IPR013083 -
Arst4g01134 298 CDD RING-HC_SIAHs 58 96 - -
Arst4g01134 298 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 14 295 IPR044286 -
Arst4g01134 298 ProSiteProfiles Zinc finger SIAH-type profile. 114 172 IPR013010 GO:0008270
Arst4g01134 298 MobiDBLite consensus disorder prediction 1 45 - -
Arst4g01134 298 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 113 IPR013083 -
Arst4g01134 298 SUPERFAMILY RING/U-box 47 91 - -
Arst4g01134 298 FunFam E3 ubiquitin-protein ligase SINAT3 111 167 - -
Arst4g01134 298 Pfam Seven in absentia protein family 103 215 IPR018121 GO:0005737|GO:0006511|GO:0007275
Arst4g01134 298 MobiDBLite consensus disorder prediction 11 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01134 Arst-Chr4 10146701 10147649 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01134 56 183 C3H Transcription Factor Family AT2G41980 36.923 6.76e-24 97.1