Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g01072 ATGAGTTCTTCAGTGACAGGAGCTGCTGGATCTGGTGATGATGGAAGAAGTAGTAACAACAAAGGAAAAAGACCTGCCTACAAACGCCTTACTTCTGCTCAAACAGCTAAACTTGAAAAGTACATTATTGATTGTCCTCATCCTGATGAAGCTCAACGAAGGCAACTTGCTGAGGAGGTTGGGATAGAGCCAAAACAAGTCAAGTTTTGGTTTCAGAATAAGAGAACTCAAATAAAGAATCAACATGAGCGAGCAGATAACAATGCTCTTCGGGCTGAGAATGAAAGGATACAAAACGAGAATCTCCTAATGAAAGAGGCACTTAATAATATACTTTGCCCTTCTTGTGGGGGCCCACCTGCCGCTGGTGAAGACCATGAACACTTCATGCAGAAAATGCTTCTTGAAAATGCCCACCTTAAGGAAGAGCATGGGAAAATATCAAACATTCTTTCAAGGTACTTGGAGAAAGAGGTGCTACACCCTGAAGATATAGAGCAGCTAAACGCAATTCCGAACAACATAGACATTGCGGGGTCATCATCAACAACACCACTGTATGATTTCTCAGTTGCAAATGGAACCTTGTTGAACCAACAACAAGGGGTTAGCATCAATGATGTTGTTGCAGGCCCTTCTTCTTCACTACTTCATCATCAGAACTATGTTCCACCACCAATTGTTGCTGATAATAATAATAATGGGGAACAAGGTGTGGCAGTAATGGAGGTTGCATTGGCCTCCGAGGTTGCGGCTACCGCCATGGATGAACTGCTTAGGCTTATTCGCCTCAATGAACCGTTCTGGGTTGGTTCTGCTTTTGATGGGAAGCTTGTGCTTCACGGTGAAAGCTACGAAAAGATGTTCCCTAGGGTTTATCAATTCAACGATGGAAACTCTCGTGTTGAATCATCAAAGGAATCAGGGATTGTCAACATAAGTGGGATTCAACTGGTTGATTTGTTTCTTGATTCGGAAAAATGGGCGAATGCTTTTCCAACAATAGTTACAAAAGCGCAGACACTTGAAGTCTTTGAAATTGGATTGCCAGAAAGTCGAAGCGGAGCCTTACAATTGATGTATGAAGAGATGCACGGGTTTTCACCATTGGTGGCATCTCGTGAATTCCAATTCCTCCGGCACTGCCATCAACTGGAGCCTGGATCGTGGATCATAACAGATGTGTCTTTCGATTCGCTTCGAAACTACCCCTTTCGCCTTCCTCGCTCTCGCTCTTGGAGACGTCCCTCTGGATGCTTGATCCAGGAACTCCCCAACTCCACTTCTTGCATGGTTACTTGGATCGAACACGTGGAAGTGGATGATAAGATTCAGACTCACCGGCTTTACAGAGATCTTGTTAGCACCAATGCTGCATATGGAGCACAGAGATGGATTATGGAACTTCAAAGAATGTGCCTCAGATCTATGAGCTATGCTCTTGAAAACATACCTGATCATGAATATGGTGGAGTGATAAATACAAATGAAGGAAGGAGGAGTGTGATGAGGCTAGGTCAGAGGCTGGTGAGGCTATTTAGTGAGAATTTGAACATGAGTGGAAAGGTGGAGTTTCCGCAGTTGAGTGTGGAGTACAACAGTGGGGTGAGGATCTCAGCTCGAAGATGCACAGAGAAAGGGCAGCCAAATGGGACCATTGTGATTGCTGCAACGTCTCTTTGGCTGCCTCTCCATTACCACACAGTGTTTGAATTCTTGACTGATATCAACAAACGCTCTCAGTGGGATGTTCTTTTCTGCACAACTCCAGTCCACTACATTGCACACATCTCAAATGGAACTCATCCTGCCAACAATACATCAATTATCCAGCCATTCATGTCAAGCGAGAACAATGCCGTTATAATTCAAGAAAGCTTCATAGACCCAGTGGGATCATCTTACATAGTGTATGCTCCAGCTGACGTGGAAGCCATCCACGTCGCCATTAGCGGCGAGGACTCTTCCACCATCCCTATCCTTCCCTCAGGATTTGTTGTGTGTGGAGATGGCAGAGCATCAATGATGAGCAACAGAGGGTCACTGTTGACGGTGGCATTCCAAATTCTGGTTAATACCATCACTTGTGGACCCAACCTAGTGAATATGGAATCTGTGGATTCTATTAACACCCTTTTGACTTCAACCGTCCAGAAGATCAAGGACGCTTTGAACTGCAATGCCTTGCACTGA 2193 0.4473 MSSSVTGAAGSGDDGRSSNNKGKRPAYKRLTSAQTAKLEKYIIDCPHPDEAQRRQLAEEVGIEPKQVKFWFQNKRTQIKNQHERADNNALRAENERIQNENLLMKEALNNILCPSCGGPPAAGEDHEHFMQKMLLENAHLKEEHGKISNILSRYLEKEVLHPEDIEQLNAIPNNIDIAGSSSTTPLYDFSVANGTLLNQQQGVSINDVVAGPSSSLLHHQNYVPPPIVADNNNNGEQGVAVMEVALASEVAATAMDELLRLIRLNEPFWVGSAFDGKLVLHGESYEKMFPRVYQFNDGNSRVESSKESGIVNISGIQLVDLFLDSEKWANAFPTIVTKAQTLEVFEIGLPESRSGALQLMYEEMHGFSPLVASREFQFLRHCHQLEPGSWIITDVSFDSLRNYPFRLPRSRSWRRPSGCLIQELPNSTSCMVTWIEHVEVDDKIQTHRLYRDLVSTNAAYGAQRWIMELQRMCLRSMSYALENIPDHEYGGVINTNEGRRSVMRLGQRLVRLFSENLNMSGKVEFPQLSVEYNSGVRISARRCTEKGQPNGTIVIAATSLWLPLHYHTVFEFLTDINKRSQWDVLFCTTPVHYIAHISNGTHPANNTSIIQPFMSSENNAVIIQESFIDPVGSSYIVYAPADVEAIHVAISGEDSSTIPILPSGFVVCGDGRASMMSNRGSLLTVAFQILVNTITCGPNLVNMESVDSINTLLTSTVQKIKDALNCNALH 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g01072 730 SUPERFAMILY Bet v1-like 533 721 - -
Arst4g01072 730 CDD homeodomain 21 82 IPR001356 GO:0003677
Arst4g01072 730 SUPERFAMILY Homeodomain-like 17 86 IPR009057 -
Arst4g01072 730 Gene3D - 11 98 - -
Arst4g01072 730 SMART START_1 249 475 IPR002913 GO:0008289
Arst4g01072 730 SMART HOX_1 23 85 IPR001356 GO:0003677
Arst4g01072 730 FunFam Homeobox-leucine zipper protein HDG1 11 97 - -
Arst4g01072 730 Pfam Homeodomain 27 79 IPR001356 GO:0003677
Arst4g01072 730 Gene3D - 279 463 IPR023393 -
Arst4g01072 730 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 21 725 IPR042160 -
Arst4g01072 730 Coils Coil 75 110 - -
Arst4g01072 730 Pfam START domain 249 474 IPR002913 GO:0008289
Arst4g01072 730 CDD START_ArGLABRA2_like 245 473 - -
Arst4g01072 730 ProSitePatterns 'Homeobox' domain signature. 56 79 IPR017970 GO:0000981|GO:0006355
Arst4g01072 730 MobiDBLite consensus disorder prediction 1 16 - -
Arst4g01072 730 SUPERFAMILY Bet v1-like 247 474 - -
Arst4g01072 730 ProSiteProfiles START domain profile. 240 478 IPR002913 GO:0008289
Arst4g01072 730 MobiDBLite consensus disorder prediction 1 30 - -
Arst4g01072 730 ProSiteProfiles 'Homeobox' domain profile. 21 81 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g01072 Arst-Chr4 9279753 9285006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g01072 23 725 Homeobox Transcription Factor Family AT1G73360 40.941 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Arst4g01072 START 3.8e-32 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g01072 K09338 - gmx:100795075 795.038