LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g01012	ATGAATAGGGCATTGATTCGTTTTCTGGTTTCTTTGTGGCTATGTTGTTGTTGTTGGTTGGTTTCAATTGGTGAAGCACAAGCACAAGGAGGAGAGTATATGAAGTACAAAGATCCAAAGCAACCAGTTGCAGTTCGTGTTAAGGACTTACTTGATCGAATGACTCTTGAGGAGAAGATTGGCCAAATGGTTCAAATTGATAGGAGTGTTGCTAATGCTGAGGTCATGAAAAACAGTTTCATTGGGAGTGTATTAAGTGGCGGTGGAAGTGAACCACTTCCAAAAGCTACTGCTCAAGATTGGGTTAACATGATAAATGAATTTCAGAAAGGGTCTCTGGCAAGTCGATTGGGTATTCCAATGATGTATGGGATTGATGCTGTTCATGGCCACAACAATGTCTATAATGCTACCATATTTCCCCATAATGTTGGACTTGGATGTACCAGAGATCCTGACCTTTCCCAAAAGATTGGAGCTGCAACCGCTCTCGAAGTCAGAGCGACGGGAATTCCTTATGTCTTTGCTCCATGTATTGCGGTTTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTACAGTGAGGATCCTAAAATTGTGGAACAAATGACAGAGATAATACCTGGTCTACAAGGAAGTCTCCCTGCCAATGCCAAGAAGGGATTTCCATATGTTGGTGGCAAGACAAAGGTAGCTGCTTGTGCTAAGCACTTTGTTGGAGATGGCGGTACAACCAAGGGAGTTAATGAGAACAACACTGTGATTGACTGGCATGGATTGCTTAGCCTTCATATGCCTGCCTATTCTGATTCCATTATCAAAGGGGTCTCGACAGTGATGGTTTCGTACTCCAGTTGGAACGGGGTAAAGATGCATGCAAATCGTGATCTAGTCACTGGCTTCCTAAAGAACACCCTTAAGTTTAAGGGATTTGTCATCTCTGATTGGCAAGGTATCGACAAAATCACATCGCCACCGGATTCAAACTACACGTACTCTGTCCAAGCTTCCATTCAAGCCGGTGTTGATATGGTGATGGTCCCGTACAAGTTTGATGAGTTCATTCAGGATCTTAATCTCTTGGTCAAGAACAATGTCATTCCAATGGACCGAATTGATGATGCTGTGGCGAGAATTTTGCTTGTCAAGTTTACCATGGGTCTTTTTGAAAATCCTCTAGCCGATTTCAGTTTAGTCGACCAGCTTGGAAGTCAGGGACACAGGGATCTTGCAAGGGAAGCTGTGAGAAAATCTCTTGTGCTGCTTAAGAATGGGAAAAATGGAAGTGCTCCACTTCTGCCTCTTTCAAAGAATGTTCCCAAAATTCTAGTTGCTGGTACACATGCTGACAATTTGGGTTACCAATGTGGCGGGTGGACAATCAAATGGCAAGGATTTAGTGGCAACATGGACACAAGCGGAACAACCATTCTTAGTGCCATAAAATCAGCAGTTGATCCAAGCACTGAAGTTGTATTTCGTGAGAACCCGGATAGCGAATTTGTAAAGTCCAACAACTTTGATTATGCTATTGTAGCTGTTGGTGAGCTTCCTTACGCCGAGACTGCTGGTGACAGCACCACATTGACAATGACGGATCCTGGTCCAAATATAATCAACAATGTCTGTGGGAATGTTAAGTGTGTGGTTATCATTGTTTCTGGTAGACCTATTGTGATAGAACCGTACGTTTCTTCTATAGACGCATTGGTGGCAGCATGGTTACCGGGCACTGAAGGCCAAGGCGTGACCGATGCCCTTTTTGGCGACTATGGTTTTAGCGGCAAGCTTGCTAGGACATGGTTCAAATCTGTGGATCAACTCCCTATGAATGTTGGGGATCCTCACTGA	1854	0.4396	MNRALIRFLVSLWLCCCCWLVSIGEAQAQGGEYMKYKDPKQPVAVRVKDLLDRMTLEEKIGQMVQIDRSVANAEVMKNSFIGSVLSGGGSEPLPKATAQDWVNMINEFQKGSLASRLGIPMMYGIDAVHGHNNVYNATIFPHNVGLGCTRDPDLSQKIGAATALEVRATGIPYVFAPCIAVCRDPRWGRCYESYSEDPKIVEQMTEIIPGLQGSLPANAKKGFPYVGGKTKVAACAKHFVGDGGTTKGVNENNTVIDWHGLLSLHMPAYSDSIIKGVSTVMVSYSSWNGVKMHANRDLVTGFLKNTLKFKGFVISDWQGIDKITSPPDSNYTYSVQASIQAGVDMVMVPYKFDEFIQDLNLLVKNNVIPMDRIDDAVARILLVKFTMGLFENPLADFSLVDQLGSQGHRDLAREAVRKSLVLLKNGKNGSAPLLPLSKNVPKILVAGTHADNLGYQCGGWTIKWQGFSGNMDTSGTTILSAIKSAVDPSTEVVFRENPDSEFVKSNNFDYAIVAVGELPYAETAGDSTTLTMTDPGPNIINNVCGNVKCVVIIVSGRPIVIEPYVSSIDALVAAWLPGTEGQGVTDALFGDYGFSGKLARTWFKSVDQLPMNVGDPH	617

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g01012	617	Gene3D	-	29	404	IPR036962	GO:0004553\|GO:0005975
	Arst4g01012	617	Pfam	Glycosyl hydrolase family 3 N terminal domain	55	381	IPR001764	GO:0004553\|GO:0005975
	Arst4g01012	617	FunFam	Glycosyl hydrolase family protein	405	617	-	-
	Arst4g01012	617	SUPERFAMILY	(Trans)glycosidases	33	419	IPR017853	-
	Arst4g01012	617	Gene3D	-	406	617	IPR036881	GO:0004553\|GO:0005975
	Arst4g01012	617	FunFam	Beta-D-glucan exohydrolase isoenzyme ExoI	29	404	-	-
	Arst4g01012	617	PRINTS	Glycosyl hydrolase family 3 signature	302	320	IPR001764	GO:0004553\|GO:0005975
	Arst4g01012	617	PRINTS	Glycosyl hydrolase family 3 signature	116	132	IPR001764	GO:0004553\|GO:0005975
	Arst4g01012	617	PRINTS	Glycosyl hydrolase family 3 signature	232	248	IPR001764	GO:0004553\|GO:0005975
	Arst4g01012	617	PRINTS	Glycosyl hydrolase family 3 signature	186	202	IPR001764	GO:0004553\|GO:0005975
	Arst4g01012	617	PRINTS	Glycosyl hydrolase family 3 signature	140	159	IPR001764	GO:0004553\|GO:0005975
	Arst4g01012	617	PANTHER	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	32	616	-	-
	Arst4g01012	617	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	420	615	IPR036881	GO:0004553\|GO:0005975
	Arst4g01012	617	PANTHER	PERIPLASMIC BETA-GLUCOSIDASE-RELATED	32	616	-	-
	Arst4g01012	617	Pfam	Glycosyl hydrolase family 3 C-terminal domain	420	611	IPR002772	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g01012	Arst-Chr4	8528417	8533631	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst4g01012	5	617	Glycoside Hydrolase	AT5G20950	71.778	0.0	897

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst4g01012	K05349		-	gmx:100775219	1098.96

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst4g01012	4	8528417	8533631	Arst4g01012	4	8528417	8533631	ECH
	Arst1g03935	1	100787800	100789597	Arst4g01012	4	8528417	8533631	PCT