Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00775 ATGGAGCAACAAATCCTTGCAGACCAAAACTTCCCTCTCTTCAAACCCACCTCCAAACCCTCCCGAAACCCTATCTCCACCGTCAACAACAATCACTCAACCTCTAAGCCACCAGCTGCCGCCGCATCCACCACCACAGATTCCTCCTCTTCCTCCGCCTCCACATTCGCCCAACTCGGCCTTGCCGAATGGGCTGTCAAGACTTGCGGCGAGCTCGGGATGAAGCGTCCCCGGCGTGTTCAGTCGCACTGCATCCCGCGCGTGCTGGAGGGCCGCCACGTGCTCGGCATCGATGAAACTGGCAGCGGCAAGACCGCCGCTTTCGCCCTCCCGATCCTCCACCGCCTGTCGGAGCACCCGTTCGGTGTGTTCGCGTTGGTGGTGACGCCCACTAGGGAACTGGCGTTCCAGCTAGCGGAGCAGTTCCGCGCCCTCGGTTCCTGCCTCCACCTCCGCATTGCAGTGGTTGTCGGCGGCATGGACATGCTTCGGCAGACCAAGGAGCTTGCTGCCAGGCCCCACATCGTTATTGCCACGCCGGGGAGGATCAAGGCCTTGCTCGAGAATCCTGATATTCCTCTAGTTTTTGCTAGAACTAAGTTCCTTGTCCTGGATGAAGCAGATCGAGTTCTTGATGTCGGTTTTCAGGAGGAATTGAAATTTATCTTTAAGTGCTTACCAGAAAATCGACAAAATCTGTTCTTTTCTGCAACAACCACAAGTAATCTGCAAAAGTTGTCTGAGCGTTACCAGGATAGACTGTATGTCTATGAGGCATATGAAGGCCTGAAAACTGTAGAAACACTTAAGCAACAGGCTATGTTCATCCCTAAAAAGGTCAAGGAGGTATATTTGATGCATATTTTATCAAAAATGGAAGATATGGACATCCGATCTGCCATTGTATTTATCTCTACATGCAGAGATTGTCATCGTTTAAGTTTAATGCTAGAAGTGCTTGATCTTGAAGCAGCAGCTCTATATTCATTTAAATCGCAGGCTCAAAGGCTTGAGGCACTTCAACGGTTTAAATCAGGGAAGGTCTCTATACTGCTAGCAACAGATGTTGCCAGCCGTGGTTTGGATATCCCGACAGTCGACCTTGTTATCAATTATGATGTTCCAAGGTTTCCACGAGACTATGTTCATCGTGTTGGTCGTACTGCCAGAGCAGGTAGAGGAGGACTGGCTTTGAGCCTTGTCACCCAGAATGATGTTGAACTTGTTTGTGAAATAGAAGCTCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTTCTTTCTATCATGAAAAAGGTTTTCAGTGCCAAAAATGTGGCAGAAATGAAGATGATGGATGATGGATTTGAGGAGAAAGCAAAGGAGAGGAAAAAACAGAAGCTGAAAATGCTAGCAGAGAAAGGATTGTTAAATAAAAGAGGTAATAAGAGAAAAAGAAACAAATTTGCAGAAGGAAAGAAGCAGAAAAAAGAAGTGGAAGCATCAGCAGATAAATCATCCTTAAAAAATGTGAGTAAGAAGAGGGAGTAA 1542 0.4708 MEQQILADQNFPLFKPTSKPSRNPISTVNNNHSTSKPPAAAASTTTDSSSSSASTFAQLGLAEWAVKTCGELGMKRPRRVQSHCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLSEHPFGVFALVVTPTRELAFQLAEQFRALGSCLHLRIAVVVGGMDMLRQTKELAARPHIVIATPGRIKALLENPDIPLVFARTKFLVLDEADRVLDVGFQEELKFIFKCLPENRQNLFFSATTTSNLQKLSERYQDRLYVYEAYEGLKTVETLKQQAMFIPKKVKEVYLMHILSKMEDMDIRSAIVFISTCRDCHRLSLMLEVLDLEAAALYSFKSQAQRLEALQRFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLALSLVTQNDVELVCEIEALIERQLEMIEYKENEVLSIMKKVFSAKNVAEMKMMDDGFEEKAKERKKQKLKMLAEKGLLNKRGNKRKRNKFAEGKKQKKEVEASADKSSLKNVSKKRE 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00775 513 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 54 82 IPR014014 GO:0003724
Arst4g00775 513 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 410 IPR027417 -
Arst4g00775 513 SMART helicmild6 311 392 IPR001650 -
Arst4g00775 513 CDD DEADc_DDX49 56 258 - -
Arst4g00775 513 MobiDBLite consensus disorder prediction 489 513 - -
Arst4g00775 513 Gene3D - 264 512 IPR027417 -
Arst4g00775 513 SMART ultradead3 73 272 IPR014001 -
Arst4g00775 513 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 45 502 - -
Arst4g00775 513 Gene3D - 19 257 IPR027417 -
Arst4g00775 513 Pfam DEAD/DEAH box helicase 79 246 IPR011545 GO:0003676|GO:0005524
Arst4g00775 513 CDD SF2_C_DEAD 269 401 - -
Arst4g00775 513 MobiDBLite consensus disorder prediction 468 513 - -
Arst4g00775 513 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 203 211 IPR000629 -
Arst4g00775 513 Pfam Helicase conserved C-terminal domain 293 392 IPR001650 -
Arst4g00775 513 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 85 257 IPR014001 -
Arst4g00775 513 MobiDBLite consensus disorder prediction 7 50 - -
Arst4g00775 513 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 284 431 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00775 Arst-Chr4 6183980 6187860 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00775 55 410 Eukaryotic Initiation Factors Gene Family AT3G13920 31.461 4.70e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00775 K14778 - gmx:100798597 758.059