Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00766 ATGGAAATGGACCCTGGCAGTGGCAAGCTTTTCATTGGAGGGATTTCATGGGACACAAATGAAGACCGACTCAGACAATATTTCCAGGGGTTTGGTGATGTCGTGGAAGCCGTGATCATGAAGGATCGGACCACCGGGCGTGCCCGTGGCTTCGGCTTTGTTGTTTTTGCTGATGCTTCTGTTGCTGAACGAGTTGTTATGGAGAAACATGTCATTGATGGAAGAACTGTTGAAGCAAAAAAAGCTGTCCCCAGAGATGACCAGAATGTTTTGAACAAAAGCAACAGCAGTAATCACAGTTCACCTGGTCCTACTCCATCCCGTACGAAGAAGATATTTGTCGGAGGTCTAGCATCCACGGTTACTGAGAGCGACTTCAAGAAGTACTTTGATCAATTTGGAACAATTACAGACGTGGTTGTGATGTATGATCATAACACCCAAAGGCCCAGAGGTTTTGGATTCATCACCTATGATTCGGAGGAAGCAGTTGAGAAAGTTCTATACAAATCTTTCCATGAATTGAATGGTAAAATGGTTGAGGTTAAGAGGGCTGTACCAAAGGAATTATCTCCAAGTCCAAGCAGAGGCCAGTTAGGTGGATATAGTTATGGTCTTAGTAGAGTTAGTAGCTGCCCCAATGGTTTCATTCAGGGATTTAATGCAAGTGTAGTTGGAAGGAATGGACTTAAATTAGATGGAAGATCGAATGCTGTTGCTGCTGGCCATAGTGAATATCCTCTTTTCGGCCATAGTTATGGAACAGGACTCAACTTTGAGCCACCATTGACCCAAAATGGAACTTCAAACTTTACTTCTACCTTCATAGGGCGAACAATGAACTCTTCGTTCGGTGGTAGTCCAAGCAGGTACAGCAATGCCATAGGTTATGCTGGTGCAAATGTAGGCAATAATTCGGCCATGAGTTCTACAAGTCAGAACTTGTGGGGAAATGGGAATCTTAACTATGCATCTAACCTTACAAATTCTGATTCTCTTTCTGGTTATCGGAACGAAAATTCAAGCATGGCTTCTTTTGGTAGTATAGGACCACTTTGGAGTTCCTCCCTTGGAACAGATCAAACTGGAATTATCGGCTCCGGATATGGTAAGGGCAGTCTAAGTAGCTCTGGAGATGTGAATTTAGGGTCGAAAACAGTAGGTTATGGAAAAAATAGCGATAACATTGTTACGTCAGGTTCTTCATATTCCTTACCAAATGCCAGTTATGATGAGTCATACAATGTTGCTTATGATGCTGGGTCATTTTACGGGGACAGTATGTGGAGAACATCCCCTTCAGAATTAGAGGATTCCGGCTCTCTTGGCTTTGGCATTGACCATGCTGTTTCAGGCTTAATGCGCAAAAGCTCTGGCAGTCACATTGGAGCTTATGCTGTTGCCAACACTCAACCAAATAGAGGAATTGTTGCCTAG 1437 0.4349 MEMDPGSGKLFIGGISWDTNEDRLRQYFQGFGDVVEAVIMKDRTTGRARGFGFVVFADASVAERVVMEKHVIDGRTVEAKKAVPRDDQNVLNKSNSSNHSSPGPTPSRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLYKSFHELNGKMVEVKRAVPKELSPSPSRGQLGGYSYGLSRVSSCPNGFIQGFNASVVGRNGLKLDGRSNAVAAGHSEYPLFGHSYGTGLNFEPPLTQNGTSNFTSTFIGRTMNSSFGGSPSRYSNAIGYAGANVGNNSAMSSTSQNLWGNGNLNYASNLTNSDSLSGYRNENSSMASFGSIGPLWSSSLGTDQTGIIGSGYGKGSLSSSGDVNLGSKTVGYGKNSDNIVTSGSSYSLPNASYDESYNVAYDAGSFYGDSMWRTSPSELEDSGSLGFGIDHAVSGLMRKSSGSHIGAYAVANTQPNRGIVA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00766 478 Gene3D - 7 88 IPR012677 -
Arst4g00766 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 107 194 - -
Arst4g00766 478 SUPERFAMILY RNA-binding domain, RBD 4 100 IPR035979 GO:0003676
Arst4g00766 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 187 IPR000504 GO:0003723
Arst4g00766 478 CDD RRM2_Hrp1p 111 188 - -
Arst4g00766 478 CDD RRM1_hnRNPA_hnRNPD_like 10 80 - -
Arst4g00766 478 SMART rrm1_1 9 80 IPR000504 GO:0003723
Arst4g00766 478 SMART rrm1_1 111 183 IPR000504 GO:0003723
Arst4g00766 478 FunFam Heterogeneous nuclear ribonucleoprotein 1 7 89 - -
Arst4g00766 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 177 IPR000504 GO:0003723
Arst4g00766 478 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 10 76 IPR000504 GO:0003723
Arst4g00766 478 Gene3D - 89 205 IPR012677 -
Arst4g00766 478 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 2 473 - -
Arst4g00766 478 MobiDBLite consensus disorder prediction 83 111 - -
Arst4g00766 478 MobiDBLite consensus disorder prediction 88 107 - -
Arst4g00766 478 SUPERFAMILY RNA-binding domain, RBD 100 206 IPR035979 GO:0003676
Arst4g00766 478 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 84 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00766 Arst-Chr4 6117396 6121450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00766 10 189 Eukaryotic Initiation Factors Gene Family AT2G36660 28.723 1.99e-14 73.9