Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00665 ATGGAAGCTGAGGGTGGTAGCTCTAATGGTGGCCCTTCTTCTAATTGTTTCATGGCTTTTGGAGAAAACAACAACAACAGTAGTAGTAATAATAACAATAACAGTGTTAGTGGTAGTGGCCTATCTCCAATGATGATGATGCCTTTACTCACTACTAATTCCCATCATCCAACAAATAATCTTATTCCTCATCAAAATCATACTTCTACTTCTAATAACATTGCAAACATCTTCCTTCCCAATACCAACACTTCTTTCATGCTTGAAAACAATACTACTACTACTACTACTACTACTACTACTGGCTTAGGGTATTATTTCATGGACAACAACAATGGAAGCTCTTCTTCCTCTTCTCCTTCTTCTGCTGTCAAGGCAAAGATCATGGCCCATCCTCACTATCACCGCCTATTGGCAGCTTACGTCAATTGTCAAAAGGTTGGAGCACCACCTGAAGTGGTGGCAAGGTTAGAAGCAGCATGTGCATCTGCCATGTCAATGGCAGCTGCAGGAGACACATCAGCTTGCCTAGGTGAAGATCCATCTCTGGATCAGTTCATGGAAGCTTACTGTGAGATGCTCACAAAGTACGAGCAAGAACTTTCAAAACCCTTGAAGGAAGCCATGATCTTCCTTCAAAGGATGGAGTCTCAGTTCAAGAATCTCACCATCTCTTCTTCTTCTAGAGATCTTGGTAGCAACGAGGGAAATGATGGGAATAATGGATCATCAGAAGAAGATGCAGATCTACAAAGCTTGATAGATCCTCAGGCAGAAGACAGGGAATTGAAGGGTCAGCTTCTTCGCAAGTACAGTGGCTACTTGGGAAGTCTGAAGCAGGAGTTCATGAAGAAGAGGAAGAAAGGGAAGCTTCCCAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACATTACAAATGGCCTTACCCTTCTGAATCACAGAAGCTGGCTCTAGCAGAATCCACTGGTTTGGATCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGGAAACGTCACTGGAAGCCTTCTGAGGACATGCAATTTGTGGTGGTGGATCCAACCCATCCACATTATTACATGGATAATGTTCTTGCCAATCCATTTTCCATGGATCTCCCCAACACAATGCTCTAG 1143 0.4261 MEAEGGSSNGGPSSNCFMAFGENNNNSSSNNNNNSVSGSGLSPMMMMPLLTTNSHHPTNNLIPHQNHTSTSNNIANIFLPNTNTSFMLENNTTTTTTTTTTGLGYYFMDNNNGSSSSSSPSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEAACASAMSMAAAGDTSACLGEDPSLDQFMEAYCEMLTKYEQELSKPLKEAMIFLQRMESQFKNLTISSSSRDLGSNEGNDGNNGSSEEDADLQSLIDPQAEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPTHPHYYMDNVLANPFSMDLPNTML 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00665 380 ProSitePatterns 'Homeobox' domain signature. 320 343 IPR017970 GO:0000981|GO:0006355
Arst4g00665 380 Pfam ELK domain 262 283 IPR005539 GO:0003677
Arst4g00665 380 ProSiteProfiles 'Homeobox' domain profile. 282 345 IPR001356 GO:0003677
Arst4g00665 380 SMART KNOX2_2 173 224 IPR005541 GO:0003677|GO:0005634
Arst4g00665 380 Gene3D - 287 349 - -
Arst4g00665 380 FunFam Homeobox protein knotted-1-like 2 287 349 - -
Arst4g00665 380 MobiDBLite consensus disorder prediction 1 46 - -
Arst4g00665 380 MobiDBLite consensus disorder prediction 226 248 - -
Arst4g00665 380 SMART ELK_2 262 283 IPR005539 GO:0003677
Arst4g00665 380 MobiDBLite consensus disorder prediction 7 46 - -
Arst4g00665 380 ProSiteProfiles ELK domain profile. 262 282 IPR005539 GO:0003677
Arst4g00665 380 Pfam KNOX2 domain 177 223 IPR005541 GO:0003677|GO:0005634
Arst4g00665 380 SMART KNOX1_2 122 166 IPR005540 GO:0003677|GO:0005634
Arst4g00665 380 CDD homeodomain 294 346 IPR001356 GO:0003677
Arst4g00665 380 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 46 351 - -
Arst4g00665 380 SMART HOX_1 284 349 IPR001356 GO:0003677
Arst4g00665 380 Pfam KNOX1 domain 123 162 IPR005540 GO:0003677|GO:0005634
Arst4g00665 380 Pfam Homeobox KN domain 302 341 IPR008422 GO:0003677|GO:0006355
Arst4g00665 380 SUPERFAMILY Homeodomain-like 284 359 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00665 Arst-Chr4 5051516 5055911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00665 124 380 Homeobox Transcription Factor Family AT1G62360 80.153 2.57e-135 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Arst4g00665 KNOX2 3.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00665 - - gmx:100805837 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g00665 4 5051516 5055911 Arst4g00665 4 5051516 5055911 ECH
Arst1g03641 1 97695656 97699772 Arst4g00665 4 5051516 5055911 PCT