LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g00634	ATGGCTGAGACTGCACAACCTAATGCTGAGTTGTTGGAATGGCCGAAGAAAGATAAGCGCCGCTTCCTTCATGCTGTGTACCGTGTTGGTGACCTTGATCGCACCATCAAGTTTTATACTGAAGCTTTTGGAATGAAGCTCTTGAGGAAAAGGGATGTTCCCGAGGAGAAATATGCCAATGCTTTTCTTGGATTTGGCCCTGAACACTCCAACTTTGTTGTGGAATTGACATATAATTATGGGGTTACATCGTATGATATTGGAACTGGATTTGGACATTTTGCTATTGCAACTCCAGATGTTTACAAATTGGTTGAAGACATCAGGGCTAAGGGTGGAAATGTCACTAGGGAGCCTGGTCCTGTTAAGGGCGGGTCATCGGTTATTGCCTTTGTCAAGGATCCTGATGGTTACACTTTTGAGCTCATCCAAAGAGCTTCAACCCCTGAGCCACTGTGTCAAGTAATGCTTCGTGTTGGTGATTTAGAGCGCTCGATTAAGTTTTACGAAAAGGCTTTAGGTATGAAGGTGGTGAAGAAAGTTGACAGACCTGAATACAAGTACACCATAGCTATGCTTGGATATGCAGAGGAGCACGAGACAACTGTGTTGGAGTTGACATATAACTATGGTGTCACCGAATACACCAAGGGAAATGCTTATGCACAGGTTGCTATTGGTACCGATGATGTATACAAGAGCGCTGAGGTAATCAACCATGTAACACAAGAGCTTGGAGGAAAGATTACTCGCCAACCAGGGCCAATTCCTGGCATTAACACCAAGATTGTTTCTTTCTTGGATCCAGATGGATGGAAAACTGTGTTGGTGGACAACGAAGATTTCCTGAAGGAACTGCAGTGA	864	0.4421	MAETAQPNAELLEWPKKDKRRFLHAVYRVGDLDRTIKFYTEAFGMKLLRKRDVPEEKYANAFLGFGPEHSNFVVELTYNYGVTSYDIGTGFGHFAIATPDVYKLVEDIRAKGGNVTREPGPVKGGSSVIAFVKDPDGYTFELIQRASTPEPLCQVMLRVGDLERSIKFYEKALGMKVVKKVDRPEYKYTIAMLGYAEEHETTVLELTYNYGVTEYTKGNAYAQVAIGTDDVYKSAEVINHVTQELGGKITRQPGPIPGINTKIVSFLDPDGWKTVLVDNEDFLKELQ	287

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g00634	287	ProSitePatterns	Glyoxalase I signature 1.	154	175	IPR018146	GO:0004462\|GO:0046872
	Arst4g00634	287	SUPERFAMILY	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	20	148	IPR029068	-
	Arst4g00634	287	Pfam	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	23	142	IPR004360	-
	Arst4g00634	287	Pfam	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	154	273	IPR004360	-
	Arst4g00634	287	Gene3D	-	1	147	IPR029068	-
	Arst4g00634	287	ProSiteProfiles	Vicinal oxygen chelate (VOC) domain profile.	151	279	IPR037523	-
	Arst4g00634	287	FunFam	Lactoylglutathione lyase	18	147	-	-
	Arst4g00634	287	PANTHER	LACTOYLGLUTATHIONE LYASE	4	287	-	-
	Arst4g00634	287	FunFam	Lactoylglutathione lyase	148	287	-	-
	Arst4g00634	287	NCBIfam	lactoylglutathione lyase	22	147	IPR004361	GO:0004462\|GO:0046872
	Arst4g00634	287	SUPERFAMILY	Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase	152	278	IPR029068	-
	Arst4g00634	287	ProSitePatterns	Glyoxalase I signature 2.	88	100	IPR018146	GO:0004462\|GO:0046872
	Arst4g00634	287	ProSiteProfiles	Vicinal oxygen chelate (VOC) domain profile.	21	145	IPR037523	-
	Arst4g00634	287	Gene3D	-	148	287	IPR029068	-
	Arst4g00634	287	CDD	GlxI_Ni	23	143	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g00634	Arst-Chr4	4652977	4656043	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst4g00634	154	278	Calmodulin-binding Proteins	AT1G08110	29.333	7.95e-12	62.0

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Arst4g00634	4	4652977	4656043	Arst4g00634	4	4652977	4656043	ECH
	Arst4g00634	4	4652977	4656043	Arst1g03612	1	97454025	97455966	ECH
	Arst1g03612	1	97454025	97455966	Arst4g00634	4	4652977	4656043	PCT