Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00480 ATGGAGCCCCTCCCTTCTCTCCCTCCCCCTCTAAACAACAACAACAACAACAACAACATGGACGATTCTTCTTCAATTTGGGATCTTACTTATCTTCTCGATTTCAACCTCGACGATTTACCCCTTGACCCTCACCAACCATCTCAACCGTTGGATTTCGATCCTCCAGCTGCTCCCGATCCACACAATATTCCTCCTCCTTCTCCTCTTCCCGCCAACGACAAGGTTCGGAAACGCGACCCGAGGCTCACGTGCTCCAACTTTCTCGCGGGCCGGGTTCCATGTGCGTGCCCCGAGATAGATGCTCAGATCGAGAACGAGGGTCTCCCCGGCAAGAAGCGCGTGCGCACCGCTTCCGCCGCGCGTGGCTCACCCCCGACGGTTTGTTGCCAGGTTCCTGGCTGCGAGGTCGATATCACGGAGCTGAAGGGGTACCACCGGAGGCATAGGGTTTGCCTACGCTGTGCTAATGCTGCCACTGTTATGCTCGACGGCGAGGCCAAGAGATACTGTCAACAGTGTGGCAAGTTTCACGTGTTGTCGGATTTTGATGAAGGTAAACGTAGCTGTAGGAGAAAGTTAGAGCGCCATAACAATAGGAGGCGAAGAAAGCCAGCAGATTCAAGAGCTGAAGCTGCTCATGAACCTCTACCCGTTGCACAAAATGAGGATTCAAATAATGACGGGGAAACAGGAAAAGGTTTAGATTCTTCAAATTTGAGTTGTGAAATAAATGAAAAAGAAGTGTCGCTGGATCTCGAAGATGAACCAGTTGCCAATCTGAACTCAGCTCCTGATATGCAGAATATTACAAATGACAGTGTTATGACTTTTCTTGCTTCTGGGGAAACACAAGTGAATAGTGGAAAAGATGCTTCCAACCTCTCTAACTCTCCCTCATATTGTGACAATAAGAGTGCTTATTCATCTTTGTGCCAAACAGGTCGGATTTCTTTCAAGCTTTATGATTGGAACCCTGCAGAATTTCCCAGAAGGCTACGCCACCAAATATTCCAATGGTTGGCGAGTATGCCTGTTGAGCTTGAGGGATATATCCGCCCAGGGTGTACGATCCTGACAATTTTTATCGCCATGCCAAAGAATATGTGGATAAATTTACAGGAAGACCCTATGTACTATGTGCGCGATCTTGTTGCTCCTGGAAAGTTCCTATCTGCAAGAGGCAATGCACTAATTTATCTGAATGATATGTTCTTCCGCATTATGAAAGATGGAACTTCTGTGACAAAAGTCAAGGTAAATATGCAGGCACCAAGGCTTCACTATGTTCATCCCACATACTTTGAGGCTGGGAAACCTCTGGAGTTTGTTGCTTGCGGAAGTAACTTGATGCAGCCTAAGTTTCGGCTTCTTGTATCTTTTTCTGGAAAGTATCTGAAGTGTGAATATTGTGTTCCATCTCCACATAACTGGACTGGGAACAATATGTCATGTGCTTTTGAGAATCAGTTATACAAGATATATGTCCCTCATACAGAGGAAACTCTCTTTGGGCCTGCATTTATTGAGGTGGAGAATGAGGCTGGTTTATCAAACTTCATTCCTGTTCTCATTGGGGACAAAGAAATTTGCAGTGAGATGAGGACATTACAGCAAAGGTTAGATGAGTCTCTTCATTCTAAACAATTCCAGTCTACATCTGGTGGTTCTATCTGCAGCTTGTGTGAAGATTTTGCACATAGGCACACATCATCAGACTTGCTTGTAGATATAGCATGGTTGCTTAAGAACCCTACCTCAGAAAATTTTGAGAGAATGATGACGGCTTCACAAGTTCAAAGATACTGTTACTTGTTGGACTTTCTTATATGCCATGATTCAGTACTCATTTTGGAAAAAATATTACCAAAGTTGGTGATCTTTACAGAAGGCTTGAAATCAAATATTGTGATTAGTCGGACGAGTGATGTTGATGTGACACAACTACTGAATTGCATGCATCTTGCTAGAGATGTTATTAATCAGAATCATCAGAAAGGCAGAGGCATAGTTGTGCATTCTGAAACAGAAGGCTTTCGGATTGAGAAAACCTGCACCCAAGACAGCTTGCCATCAGTTTCGAGAATAAAAAGTCAGGATGTTCTATCCAGAACGGATTCAAAGTGTGGAATAATGAGAAGCCCAACATCTAATGACGAAATTGATAGGATACCACTTTTGAAGAGGGAGATTATAATGAATATGGAAGAGTTGCCTAAACGATCCAGCCGGCGATATGTCGGTAGGGGATTCTTGAGCTCTCGACCGGCAATGTTTGTGATTGTTTCGGTTGCTGTTTGTCTTGCAGTATGTGTAGCCGTCCTTCATCGGGGGAGGGTTAGTGAGTTAGCTGTATCCATTAGAAGGTGCTTGTTTAACTCTTAG 2385 0.4444 MEPLPSLPPPLNNNNNNNNMDDSSSIWDLTYLLDFNLDDLPLDPHQPSQPLDFDPPAAPDPHNIPPPSPLPANDKVRKRDPRLTCSNFLAGRVPCACPEIDAQIENEGLPGKKRVRTASAARGSPPTVCCQVPGCEVDITELKGYHRRHRVCLRCANAATVMLDGEAKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKPADSRAEAAHEPLPVAQNEDSNNDGETGKGLDSSNLSCEINEKEVSLDLEDEPVANLNSAPDMQNITNDSVMTFLASGETQVNSGKDASNLSNSPSYCDNKSAYSSLCQTGRISFKLYDWNPAEFPRRLRHQIFQWLASMPVELEGYIRPGCTILTIFIAMPKNMWINLQEDPMYYVRDLVAPGKFLSARGNALIYLNDMFFRIMKDGTSVTKVKVNMQAPRLHYVHPTYFEAGKPLEFVACGSNLMQPKFRLLVSFSGKYLKCEYCVPSPHNWTGNNMSCAFENQLYKIYVPHTEETLFGPAFIEVENEAGLSNFIPVLIGDKEICSEMRTLQQRLDESLHSKQFQSTSGGSICSLCEDFAHRHTSSDLLVDIAWLLKNPTSENFERMMTASQVQRYCYLLDFLICHDSVLILEKILPKLVIFTEGLKSNIVISRTSDVDVTQLLNCMHLARDVINQNHQKGRGIVVHSETEGFRIEKTCTQDSLPSVSRIKSQDVLSRTDSKCGIMRSPTSNDEIDRIPLLKREIIMNMEELPKRSSRRYVGRGFLSSRPAMFVIVSVAVCLAVCVAVLHRGRVSELAVSIRRCLFNS 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00480 794 MobiDBLite consensus disorder prediction 38 77 - -
Arst4g00480 794 MobiDBLite consensus disorder prediction 48 72 - -
Arst4g00480 794 ProSiteProfiles Zinc finger SBP-type profile. 127 204 IPR004333 GO:0003677
Arst4g00480 794 MobiDBLite consensus disorder prediction 194 238 - -
Arst4g00480 794 MobiDBLite consensus disorder prediction 220 238 - -
Arst4g00480 794 MobiDBLite consensus disorder prediction 1 23 - -
Arst4g00480 794 Gene3D - 121 191 IPR036893 GO:0003677|GO:0005634
Arst4g00480 794 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 79 609 IPR044817 GO:0003677
Arst4g00480 794 Pfam SBP domain 130 204 IPR004333 GO:0003677
Arst4g00480 794 SUPERFAMILY SBT domain 128 207 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00480 Arst-Chr4 3254529 3260115 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00480 8 788 SBP-box Gene Family AT5G18830 46.617 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst4g00480 SBP 7.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00480 - - gmx:100776034 1101.27