Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00421 ATGATAAGGAGCATAATCCAAGACATGAGGTCTCGTTCTCACCGCGTGGTTCAGGACTTGTCTTCCATGGAAGAAGATTCAGCACTTTCAGAGTTGATCTCCGGATGGGTTGAGGCAGAGTTGCTGGGCGGAGTTTGCCGGAGCTGGAGACACATCACTAAAGAGATCGTTAAGACTCCTGAGCTATCAGCAAAATTAACCTTCCCAATTTCTGTTAAACAGCCTGGTCCAAGGGAGCATCTCCTCCAGTGCTTTATAAGGCGCAACCGGTCCACCCAAACATACTATTTGTATCTTAGCTTATCTAATACACTATCTGAAGATGGCAAGTTCCTTTTGGCTGCACGCAAATGCAGACGTCCCACCTGCACAGATTATATCATCTCTCTGCATGCAGACGACATGTCAAAGGGAAGCAACACCTATGTTGGAAAACTGAGATCAAATTTTCTCGGAACCAAGTTCACAATCTATGATGGGCAGCCTCCCCATGCCCGGGCAAAGATTACAAAAAGTCGCTCCACCAGGCTGGTGAATTTAAAACAAGTTGCACCCAAGGTTCCTACAGGCAATTATCCAGTGGCTCACATATCATATGAATTGAATGTGCTAGGCTCTAGGGGGCCTAGGAGAATGAACTGCATCATGGATTCCCTTCCTGCTTCAGCAATTGAACCGGGAGGGGTGGCCCCTACACAGACCGAGTTTTCCCTCAGCAATGCAGATATGTTCCCCACATTCCCTTTTTTTCGATCGAGGTCAAATCGTGTTGACAACTCCCTTTCTGGACCCCTGGCTAATCAAAAGGATGGGGTTCTGGTGTTAAAAAACAAGGCTCCCAGGTGGCACGAGCAGCTGCAGTGTTGGTGCTTGAACTTTCATGGGCGGGTGACAATTGCTTCGGTTAAAAACTTTCAGCTGGTGGCTTCCCCAGAAAATGGACCTGCTGGACCAGAACATGATAAGATCATACTCCAATTTGGAAAAGTTGGGAAGGATCTGTTTACAATGGATTATCGATATCCTATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGATACCAAGATTGCGTGTGAATGA 1092 0.4679 MIRSIIQDMRSRSHRVVQDLSSMEEDSALSELISDXWVEAELLGGVCRSWRHITKEIVKTPELSAKLTFPISVKQPGPREHLLQCFIRRNRSTQTYYLYLSLSNTLSEDGKFLLAARKCRRPTCTDYIISLHADDMSKGSNTYVGKLRSNFLGTKFTIYDGQPPHARAKITKSRSTRLVNLKQVAPKVPTGNYPVAHISYELNVLGSRGPRRMNCIMDSLPASAIEPGGVAPTQTEFSLSNADMFPTFPFFRSRSNRVDNSLSGPLANQKDGVLVLKNKAPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPENGPAGPEHDKIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFDTKIACE 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00421 364 PANTHER TUBBY-RELATED 40 362 - -
Arst4g00421 364 ProSitePatterns Tub family signature 1. 294 307 IPR018066 -
Arst4g00421 364 Pfam Tub family 73 359 IPR000007 -
Arst4g00421 364 FunFam Tubby-like F-box protein 69 364 - -
Arst4g00421 364 SUPERFAMILY Tubby C-terminal domain-like 61 364 IPR025659 -
Arst4g00421 364 ProSitePatterns Tub family signature 2. 349 364 IPR018066 -
Arst4g00421 364 Gene3D Tubby Protein; Chain A 70 364 IPR025659 -
Arst4g00421 364 PRINTS Tubby superfamily signature 276 293 IPR000007 -
Arst4g00421 364 PRINTS Tubby superfamily signature 321 340 IPR000007 -
Arst4g00421 364 PRINTS Tubby superfamily signature 192 219 IPR000007 -
Arst4g00421 364 PRINTS Tubby superfamily signature 127 143 IPR000007 -
Arst4g00421 364 PRINTS Tubby superfamily signature 294 310 IPR000007 -
Arst4g00421 364 PRINTS Tubby superfamily signature 342 364 IPR000007 -
Arst4g00421 364 PRINTS Tubby superfamily signature 143 167 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00421 Arst-Chr4 3079312 3082905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00421 10 364 TUB Transcription Factor Family AT2G47900 67.725 0.0 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Arst4g00421 Tub 1e-112 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g00421 4 3079312 3082905 Arst4g00421 4 3079312 3082905 ECH