Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00415 ATGGCTTCAAATCAGATTCAGTCATCTACTACAATTCATGCAGGGGCAACTAATGATGCTTTATACAAGGAACTGTGGCATGCCTGTGCTGGACCTCTTGTCACTCTTCCTCGTGAAGGGGAAAGGGTTTATTACTTTCCACAAGGTCATATGGAACAGCTCGAGGCATCTATGAATCAAGGTTTAGAGCAGCAAATGCCTTCCTTTAATCTTCCATCTAAGATACTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAACCTGAAACCGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGGTAAGCCCTGATGATCCTCTGCCTGAGCCACCAAGGTGTACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACCAGCACCCATGGAGGTTTCTCTGTTCTTCGAAGACATGCGGATGATTGTCTGCCACCACTGGATATGTCTCAGCAACCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGGCATATTTTTCGAGGGCAACCAAGACGCCACTTACTGACAACTGGTTGGAGTGTCTTCGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTCCGAGTAGGAGTTAGGAGGCTCATGAGACAGCAAAACAACATGCCATCTTCGGTTATATCCAGTCACAGCATGCATCTCGGTGTTCTGGCTACTGCATCTCACGCCATTGCCACCGGAACACTGTTTTCAGTATTTTACAAACCCAGAACAAGCCGGTCGGAGTTTATTGTGAGTATCAATAAATATCTTGAAGCTCGAAATCATAAACTCTCAGTTGGTATGAGATTCAAAATGAGATTTGAAGGTGATGAGGTTCCTGAAAGAAGGTTCAGTGGGACAATTGTTGGCGTTGGAGATAGCACATCATCAGTTTGGGCTGATTCTGAGTGGCGATCGTTGAAGGTTCAATGGGATGAACCATCGTCAATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACCACCCCAGCAAACTCCCAGCCAGCCCAAAGAACAAAGAGATCGCGGCCTCCGATCCTGCCTTCACCAATGCCTGATTCATCAATGCAAGTTGAATCTCCATCTTTCTCCTATCGCGAACATGGCCGAGACCTCTATCCATCACCTAAATTCAATTCTAATGCAGCCAAATTTCTTGGTTTTGGCGGGAATATCTCTGCACCCAACAAGTCCATATATTGGTCGAATAGGATGGAAAACTCTACAGAATCATTTTCACCTATAGCACTTAAAGAATCTGCTGAAAAGAGACAAGGCACTGGAAATGGCTGTAGACTCTTTGGAATTCAGTTACTTGACAATGCTCATGCAGAAGAAAGTTTGCCAACTGTCACCTTGTCAGTAAGGGTAGGTGATGATAGGTCTGTTCCATCTTTGGATGGTGAGTCTGATCAGCAGTCTGAACCATCAAATGTTAATCAATCGGATATTCCTTCTGCAAGTTGTGATGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAAAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTGACAAGGTTTGATGGATATGAGGATCTGCTTTGGAAATTGGAAGAGATGTTTGACATCAAGGGTGAGCTCTGTGGATCTGAAAAGAAGTGGCAAGTTGTCTACACTGATAATGAAGATGACATGATGATGGTTGGAGATGATCCATGGCTTGAGTTCTGTAGTGTCGTGAGGAAAATTTTCATCTACACAGTAGAAGAGGTGAAGAAACTTTCACCGAAAATTGGACTTCCAATTAATGAAGTGGTTAAACCAAGCAAACTGGATGCTGAAGCAGGTGTGAATCCAGAGGATCAGTCATCCGTTGTGGGGCCTGGTTGCTAG 1995 0.4426 MASNQIQSSTTIHAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVVSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDSTSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTTPANSQPAQRTKRSRPPILPSPMPDSSMQVESPSFSYREHGRDLYPSPKFNSNAAKFLGFGGNISAPNKSIYWSNRMENSTESFSPIALKESAEKRQGTGNGCRLFGIQLLDNAHAEESLPTVTLSVRVGDDRSVPSLDGESDQQSEPSNVNQSDIPSASCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLWKLEEMFDIKGELCGSEKKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTVEEVKKLSPKIGLPINEVVKPSKLDAEAGVNPEDQSSVVGPGC 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00415 664 SMART B3_2 126 228 IPR003340 GO:0003677
Arst4g00415 664 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Arst4g00415 664 MobiDBLite consensus disorder prediction 499 532 - -
Arst4g00415 664 SUPERFAMILY CAD & PB1 domains 542 617 - -
Arst4g00415 664 MobiDBLite consensus disorder prediction 358 398 - -
Arst4g00415 664 Gene3D - 535 629 - -
Arst4g00415 664 ProSiteProfiles PB1 domain profile. 540 633 IPR000270 GO:0005515
Arst4g00415 664 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Arst4g00415 664 Pfam AUX/IAA family 587 630 IPR033389 -
Arst4g00415 664 Pfam AUX/IAA family 537 576 IPR033389 -
Arst4g00415 664 SUPERFAMILY DNA-binding pseudobarrel domain 115 255 IPR015300 -
Arst4g00415 664 Gene3D - 289 362 - -
Arst4g00415 664 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Arst4g00415 664 FunFam Auxin response factor 535 629 - -
Arst4g00415 664 CDD B3_DNA 124 226 IPR003340 GO:0003677
Arst4g00415 664 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 629 IPR044835 GO:0003677|GO:0006355|GO:0009725
Arst4g00415 664 MobiDBLite consensus disorder prediction 358 372 - -
Arst4g00415 664 FunFam Auxin response factor 124 228 - -
Arst4g00415 664 FunFam Auxin response factor 289 361 - -
Arst4g00415 664 Gene3D - 123 228 IPR015300 -
Arst4g00415 664 MobiDBLite consensus disorder prediction 492 532 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00415 Arst-Chr4 3041716 3046939 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00415 14 658 B3 DNA Binding Superfamily AT1G59750 72.615 0.0 932
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Arst4g00415 B3 7.2e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00415 K14486 - gmx:100793224 1193.72