Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00414 ATGGCTTCAAATCAGATTCAGTCATCTACTACAATTCATGCAGGGGCAACTAATGATGCTTTATACAAGGAACTGTGGCATGCCTGTGCTGGACCTCTTGTCACTCTTCCTCGTGAAGGGGAAAGGGTTTATTACTTTCCACAAGGTCATATGGAACAGCTCGAGGCATCTATGAATCAAGGTTTAGAGCAGCAAATGCCTTCCTTTAATCTTCCATCTAAGATACTATGTAAAGTGGTCAATGTTCATCTTCGGGCTGAACCTGAAACCGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGGTAAGCCCTGATGATCCTCTGCCTGAGCCACCAAGGTGTACAGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACCAGCACCCATGGAGGTTTCTCTGTTCTTCGAAGACATGCGGATGATTGTCTGCCACCACTGGATATGTCTCAGCAACCACCATGGCAAGAATTGGTTGCAACTGATTTGCATGGGAATGAATGGCATTTTCGGCATATTTTTCGAGGGCAACCAAGACGCCACTTACTGACAACTGGTTGGAGTGTCTTCGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCATTTATATTCTTAAGGGGTGAAAATGGAGAGCTCCGAGTAGGAGTTAGGAGGCTCATGAGACAGCAAAACAACATGCCATCTTCGGTTATATCCAGTCACAGCATGCATCTCGGTGTTCTGGCTACTGCATCTCACGCCATTGCCACCGGAACACTGTTTTCAGTATTTTACAAACCCAGAACAAGCCGGTCGGAGTTTATTGTGAGTATCAATAAATATCTTGAAGCTCGAAATCATAAACTCTCAGTTGGTATGAGATTCAAAATGAGATTTGAAGGTGATGAGGTTCCTGAAAGAAGGTTCAGTGGGACAATTGTTGGCGTTGGAGATAGCACATCATCAGTTTGGGCTGATTCTGAGTGGCGATCGTTGAAGGTTCAATGGGATGAACCATCGTCAATTTTGCGTCCTGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACCACCCCAGCAAACTCCCAGCCAGCCCAAAGAACAAAGAGATCGCGGCCTCCGATCCTGCCTTCACCAATGCCTGATTCATCAATGCAAGGTGTATGGAAACCACCAGTTGAATCTCCATCTTTCTCCTATCGCGAACATGGCCGAGACCTCTATCCATCACCTAAATTCAATTCTAATGCAGCCAAATTTCTTGGTTTTGGCGGGAATATCTCTGCACCCAACAAGTCCATATATTGGTCGAATAGGATGGAAAACTCTACAGAATCATTTTCACCTATAGCACTTAAAGAATCTGCTGAAAAGAGACAAGGCACTGGAAATGGCTGTAGACTCTTTGGAATTCAGTTACTTGACAATGCTCATGCAGAAGAAAGTTTGCCAACTGTCACCTTGTCAGTAAGGGTAGGTGATGATAGGTCTGTTCCATCTTTGGATGGTGAGTCTGATCAGCAGTCTGAACCATCAAATGTTAATCAATCGGATATTCCTTCTGCAAGTTGTGATGCTGAAAAATCATGCCTGCGGTCTCCCCAGGAGTCACAAAGCAGGCAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTGGATTTGACAAGGTTTGATGGATATGAGGATCTGCTTTGGAAATTGGAAGAGATGTTTGACATCAAGGGTGAGCTCTGTGGATCTGAAAAGAAGTGGCAAGTTGTCTACACTGATAATGAAGATGACATGATGATGGTTGGAGATGATCCATGGCTTGAGTTCTGTAGTGTCGTGAGGAAAATTTTCATCTACACAGTAGAAGAGGTGAAGAAACTTTCACCGAAAATTGGACTTCCAATTAATGAAGTGGTTAAACCAAGCAAACTGGATGCTGAAGCAGGTGTGAATCCAGAGGATCAGTCATCCGTTGTGGGGCCTGGTTGCTAG 2013 0.4431 MASNQIQSSTTIHAGATNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNVHLRAEPETDEVYAQITLLPEADQSEVVSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQNNMPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVGDSTSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTTPANSQPAQRTKRSRPPILPSPMPDSSMQGVWKPPVESPSFSYREHGRDLYPSPKFNSNAAKFLGFGGNISAPNKSIYWSNRMENSTESFSPIALKESAEKRQGTGNGCRLFGIQLLDNAHAEESLPTVTLSVRVGDDRSVPSLDGESDQQSEPSNVNQSDIPSASCDAEKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLWKLEEMFDIKGELCGSEKKWQVVYTDNEDDMMMVGDDPWLEFCSVVRKIFIYTVEEVKKLSPKIGLPINEVVKPSKLDAEAGVNPEDQSSVVGPGC 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00414 670 SMART B3_2 126 228 IPR003340 GO:0003677
Arst4g00414 670 Gene3D - 123 228 IPR015300 -
Arst4g00414 670 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Arst4g00414 670 ProSiteProfiles PB1 domain profile. 546 639 IPR000270 GO:0005515
Arst4g00414 670 MobiDBLite consensus disorder prediction 498 530 - -
Arst4g00414 670 SUPERFAMILY DNA-binding pseudobarrel domain 115 255 IPR015300 -
Arst4g00414 670 MobiDBLite consensus disorder prediction 505 530 - -
Arst4g00414 670 Gene3D - 541 635 - -
Arst4g00414 670 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Arst4g00414 670 Pfam AUX/IAA family 543 582 IPR033389 -
Arst4g00414 670 Pfam AUX/IAA family 593 636 IPR033389 -
Arst4g00414 670 Gene3D - 289 362 - -
Arst4g00414 670 FunFam Auxin response factor 124 228 - -
Arst4g00414 670 FunFam Auxin response factor 289 361 - -
Arst4g00414 670 CDD B3_DNA 124 226 IPR003340 GO:0003677
Arst4g00414 670 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 20 635 IPR044835 GO:0003677|GO:0006355|GO:0009725
Arst4g00414 670 MobiDBLite consensus disorder prediction 358 394 - -
Arst4g00414 670 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Arst4g00414 670 MobiDBLite consensus disorder prediction 358 372 - -
Arst4g00414 670 FunFam Auxin response factor 541 635 - -
Arst4g00414 670 SUPERFAMILY CAD & PB1 domains 548 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00414 Arst-Chr4 3041716 3046939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00414 14 664 B3 DNA Binding Superfamily AT1G59750 72.672 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Arst4g00414 B3 7.3e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00414 K14486 - gmx:100793224 1212.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g00414 4 3041716 3046939 Arst4g00414 4 3041716 3046939 ECH