Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00406 ATGGCTTGTTCAAATTGCCAATCTGTGTTGCCTAAACCAAATGATTGGGTGAAGGGTAAATTGGTCGGAACCGGATCTTTCGGTACAGTCAATTTGGCCATGAACAAATCCACCGGAGGGCTTTTTGTGGTGAAATCAGCACATATAGGGGCTGGTTGTGAGGCTTTGAGTAATGAGGTGAAAATCCTAGAGAGTTTAAGTTCATCACCATATATTGTTCAATATCTGGGGAAAGAGGAGGACCAAGGTAATCTCAATGTCTTCATGGAGTACATGGCTGGAGGTAGCTTGGCAGATGTGGCTCAAAAGTTTGGTGGATCATTGGATGAAGATGTTGTCCGGTTGTATACTAGAGAAATACTTCATGGTTTACAGCATCTTCACCAGCATGGAATTGTGCATTGTGATCTTAAGTGTAAGAATGTGCTTTTAGGTTCATCCGGGAACATCAAATTGGCAGACTTTGGATGTGCCAAAAGGGTGAAGGACTTGAAGGCCGCCGCGCGTTTAGGAGGGACTCCTCTATGGATGGCCCCTGAAGTATTGAGGAATGAGCAGTTGGATGTTTCTGCTGATATATGGTCTTTGGGATGCACTGTTATTGAAATGGCCACTGGAAGGTATCCTTGGGCCGGCGAAGTGTCGAATCCAATGGCTTCTGTGCTGAGGATCGCCAATGGTGACGAGATACCTCAACTTCCAGCTCATTTCTCCAAGGAGGGTTTGGATTTCTTGACCAGGTGCTTGGAGAGAGACCCCAAAAAGAGGTGTACTGCTCAGGACTTGCTTCACCATCCATTTCTGTCAAGGAGTTCAAGAAGATCTTCTCAACAAAAACAGTGTGTATCTTCACCAACAAGTGTTTTGGAGGTTCATGGTTTTGAGGCTACTTGTGATTTAGATGATGAGTTAGAAAGCTCTCGGGAACATGATAAGCTCTCTTTTAGAAACCCGTTCGCGTGCCATGATCGAGCAGTAGGAAGCAAAGCATGCCAACCAGAAGACATTGCCCTATGGTCGTCTGGGAGTTGGATTACTGTTAGGTCAGGATAA 1053 0.453 MACSNCQSVLPKPNDWVKGKLVGTGSFGTVNLAMNKSTGGLFVVKSAHIGAGCEALSNEVKILESLSSSPYIVQYLGKEEDQGNLNVFMEYMAGGSLADVAQKFGGSLDEDVVRLYTREILHGLQHLHQHGIVHCDLKCKNVLLGSSGNIKLADFGCAKRVKDLKAAARLGGTPLWMAPEVLRNEQLDVSADIWSLGCTVIEMATGRYPWAGEVSNPMASVLRIANGDEIPQLPAHFSKEGLDFLTRCLERDPKKRCTAQDLLHHPFLSRSSRRSSQQKQCVSSPTSVLEVHGFEATCDLDDELESSREHDKLSFRNPFACHDRAVGSKACQPEDIALWSSGSWITVRSG 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00406 350 Pfam Protein kinase domain 18 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst4g00406 350 SMART serkin_6 16 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst4g00406 350 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Arst4g00406 350 Gene3D Phosphorylase Kinase; domain 1 9 97 - -
Arst4g00406 350 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 15 296 - -
Arst4g00406 350 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Arst4g00406 350 ProSiteProfiles Protein kinase domain profile. 16 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Arst4g00406 350 Gene3D Transferase(Phosphotransferase) domain 1 98 313 - -
Arst4g00406 350 CDD STKc_MAPKKK 15 268 - -
Arst4g00406 350 FunFam MAP kinase kinase kinase18 11 315 - -
Arst4g00406 350 SUPERFAMILY Protein kinase-like (PK-like) 14 307 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00406 Arst-Chr4 3002279 3004058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00406 8 348 MAP Kinase Kinase Kinase AT5G55090 40.278 4.87e-77 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Arst4g00406 Pkinase 1.3e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00406 K20716 - gmx:100798237 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Arst4g00406 4 3002279 3004058 Arst4g00406 4 3002279 3004058 ECH