LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Arst4g00402	ATGTTGATTTTCTTTCCGCTTCACTCGAGTGTAGGATCCAACATTTTCAGGATTAGGGTTTTCAGATATATGGGTTGCATATGCTTCAAAGGGAAATCTGCAGAGGAATACGTTGCAGAGAACCGCATAAGAAGGGGCAAGTCCAAGGCGTTGAAATCAAAGCTTGCGAGTAATTCTCTTCCCCTCATAGACGTTGGGAATGATGCCGTCCAAGGGGAGAACGAAGAGGTTCAGGTGGCTGTGGCACCCACGGTGTTCAGTGTGACCAACGGGGAGCGAGGAGCTCTGGTTATCGCTGGATGGCCCTCTTGGCTCGCTGCCGTTGCTGGGGAAGCCATTAATGGGTGGATTCCACGTAGAGCTGACTCCTTTGAGAAGTTCGATAAGATTGGACAAGGAACTTATAGTAGTGTTTATAGAGCTCGTGATCTTGAAACAAATAAAATTGTTGCATTAAAGAAGGTTCGATTTGCTACTATGGATCCAGAAAGTGTTCGCTTTATGGCAAGGGAAATTCTTTTGCTGCGAAGGCTTGATCATCCAAATGTCATGAAGCTAGAAGGCATGATTACTTCCAGGGTTTCTGGTAGCTTGTACCTTATTTTTGACTATATGGAACATGATCTTGCAGGGCTTGCAGCAATACCTGGCATCAAGTTTTCTGAAGCACAGATCAAATGTTATATGCAACAACTACTTCGTGGTCTTGAGCATTGCCACGGTCGAGGTGTTATGCACCGTGACATCAAGGGCTCAAATCTTCTAGTTGATAATAATGGCCGTTTGAAGATTGGTGATTTTGGACTTGCAACTTCGTTTCAGCCATCTAAGGGGAAGCCTTTAACAAGTCGTGTTGTAACCTTGTGGTACCGACCGCCTGAACTTTTACTCGGAGCTACAGATTATGGAGTTTCTGTGGACTTATGGAGTTCTGGTTGTATTCTTGCTGAATTGTTTTCTGGAAAGGCTATAATGCCTGGACGAACAGAGGTGGAGCAACTTCATAAAATTTTCAAACTTTGTGGGTCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTGCGAAATGCAACAATTTTCAAACCTCAACAACCATACAAACGGGTTGTTTCTGAGACATTCAAGAATTTTCCTTCATCTGCACTGGGCCTATTGGAGGTACTTCTTGCTACAGAACCTGAAGATCGAGGAACAGCATCTTTAGCACTTCAAAATGAGTTCTTTACCACAGAGCCACTTCCATGTGATCCATCAACTTTGCCAAATTATCCACCGAGTAAGGAGTTTGATGTCAAACTTCAACAAGAGGAAGCTAGAAGGAGAGAGAGATCAACAAATAAAGAGCGTGAACAAGGATCAGTTAGGAGGAAGTTAAAAGAGTCTAAAAATGTTCTAGCTCCTGATGCTAATGCTGAATTGCAAGCATCAATAGAGAAGCGACAAAGGCAACCTAATTCAAAATCCATTGTTGAAAGCTACAATCCTAAAGAGGATGGCAACTCTGGCTTCCCTCTTGGACTTGCAAAGCCAAGAGTTCTCAGTGTCTTCTCTCATTCCGGCCAGTCAATGCATCCAAGTGCATATGGTTCCTCAAACAATATGAATTTGAAAGAGGAAAATGTTCTTATTGGCTTCAATCATGACTTTGGATCAAGGCACACTGAATTGAGTAAACAAAAATTTCGTTGGCTTGATGGCACACAATTGTCCAAATTTTCTGGTTCATTTGCAGTTCGAGGTGATGGCAATTCGAATGATTTGCTGGATGGACTGAAATTGCACCAAAAGGACTTCAATCCTTTTGAAAAGGATCTTACCATGGGTTATGCTTCCAAAAACAAACGCTTCCACTATTCTGGACCATTGTTGTCACAGGGGGGGGGGAACATTGAAGACATGCTCAAGGAGCACGAAAGACAAATCCAACAGGCTGCCCGCAAAGGTCGTTTGGAAAAGGACAACACAAAAAAGGCTAAGAAGGAGAATGGCCTAACCGAATCACTACTATAG	2010	0.4308	MLIFFPLHSSVGSNIFRIRVFRYMGCICFKGKSAEEYVAENRIRRGKSKALKSKLASNSLPLIDVGNDAVQGENEEVQVAVAPTVFSVTNGERGALVIAGWPSWLAAVAGEAINGWIPRRADSFEKFDKIGQGTYSSVYRARDLETNKIVALKKVRFATMDPESVRFMAREILLLRRLDHPNVMKLEGMITSRVSGSLYLIFDYMEHDLAGLAAIPGIKFSEAQIKCYMQQLLRGLEHCHGRGVMHRDIKGSNLLVDNNGRLKIGDFGLATSFQPSKGKPLTSRVVTLWYRPPELLLGATDYGVSVDLWSSGCILAELFSGKAIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLRNATIFKPQQPYKRVVSETFKNFPSSALGLLEVLLATEPEDRGTASLALQNEFFTTEPLPCDPSTLPNYPPSKEFDVKLQQEEARRRERSTNKEREQGSVRRKLKESKNVLAPDANAELQASIEKRQRQPNSKSIVESYNPKEDGNSGFPLGLAKPRVLSVFSHSGQSMHPSAYGSSNNMNLKEENVLIGFNHDFGSRHTELSKQKFRWLDGTQLSKFSGSFAVRGDGNSNDLLDGLKLHQKDFNPFEKDLTMGYASKNKRFHYSGPLLSQGGGNIEDMLKEHERQIQQAARKGRLEKDNTKKAKKENGLTESLL	669

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Arst4g00402	669	Gene3D	Transferase(Phosphotransferase) domain 1	212	448	-	-
	Arst4g00402	669	SUPERFAMILY	Protein kinase-like (PK-like)	117	416	IPR011009	-
	Arst4g00402	669	Gene3D	Phosphorylase Kinase; domain 1	119	211	-	-
	Arst4g00402	669	FunFam	probable serine/threonine-protein kinase At1g54610	111	206	-	-
	Arst4g00402	669	MobiDBLite	consensus disorder prediction	476	495	-	-
	Arst4g00402	669	MobiDBLite	consensus disorder prediction	640	663	-	-
	Arst4g00402	669	Coils	Coil	627	654	-	-
	Arst4g00402	669	MobiDBLite	consensus disorder prediction	430	463	-	-
	Arst4g00402	669	MobiDBLite	consensus disorder prediction	640	669	-	-
	Arst4g00402	669	ProSitePatterns	Protein kinases ATP-binding region signature.	130	153	IPR017441	GO:0005524
	Arst4g00402	669	CDD	STKc_CDK9_like	124	408	-	-
	Arst4g00402	669	MobiDBLite	consensus disorder prediction	412	500	-	-
	Arst4g00402	669	ProSiteProfiles	Protein kinase domain profile.	124	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst4g00402	669	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	244	256	IPR008271	GO:0004672\|GO:0006468
	Arst4g00402	669	FunFam	probable serine/threonine-protein kinase At1g54610	207	448	-	-
	Arst4g00402	669	PANTHER	CELL DIVISION PROTEIN KINASE	122	414	-	-
	Arst4g00402	669	SMART	serkin_6	124	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Arst4g00402	669	Pfam	Protein kinase domain	124	408	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Arst4g00402	Arst-Chr4	2984312	2989429	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Arst4g00402	116	451	Core Cell Cycle Gene Families	AT5G10270	49.435	1.68e-113	348

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Arst4g00402		Pkinase	5.2e-66	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Arst4g00402	-		-	aip:107638508	1234.17