Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00357 ATGGACGCTCAACAAACTACCAACAGAATGTGTTCTATAACTCAAATGAAGCAATTCCAATCAAATTCTGCGGGTGGTCTTCATTGTCAAGGTAAAAAGCCAAGTGTCAATTGGTCGCAACATGCCGAAGCACATCAAAACTTTTCCTGCCAGCTCAAGTTCTTGAGCTCCAATTTCCTATTCTCTTTGCCAACACAGAAGCCTCAAAATGGAGAACCAACGGATGGGAGGTTTGTAATCAATCAGAATCCAAATATTCAGACTTCACAGAGGGCACAAGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTCCAGAATTCTAGCAGGAGCTATCCCCAACCTGGAAAAACTGTTCAAGTTACTCCTCGGCACCATGAAGACAGGCGAATGAACCCCTTACAAAGGACCCATGAGAACGATAAGCTTAAGCCTCCTGATGTTACCACAACTCCAATTGTTACTAATCATAATTCACAAGTTTTGGACAGTTCAGTGAACAAGCATATCAAGCATGCTGGCCAAATCAACGAGGCATCAACAGGCATGGTTGTTGACATTGATGATGATGACATACTTGAGACCATTGATATTGATCAAATAGTGGAGAACTATCAGTCATCTTCCACACCCAAACCTCCAATTTCCAAATTCCCTCATATTACACCAACTGCAGATACAAATAATTTTGCTAGAGAGGGGGGTAACTGTTTGCCACCAGAACTTTGTATAGATTGCAATCATGGTTACAAGTTAGGGCTTTGTCCTGAAGCAACAAGTCATTTGCAGGAATTTAAGGATAATCTGATTGCTATTTCTAATGAACTACTTGACAATGTTGACAACCTTACTTCTTTGCAGTTGGCAAAGCTTCGGCAAGATAGGTCACAGCTGAATATGAAAATTCAGCAGCTTGAAAAATATATTCATTCCAATAATCTTGAGGACAGGAAAAAGTCAAATTTGTTTGCATCCACGGCACCTACATCATTTGTATATGAAACTCCTCAGCAGACTCTCCACAGTAATGCAACAAAGACATATGAATCTCAGGATTATGTGGGTAATGGGACATGTGGGTCATTGTTCCAGTCTCTTTCATTCTCTTGTGCAGATACATATGGCGTGTCATCAGGTCCAGTGTCGAGGGAAGCTTTCATCCCAAAGATTATTGAAGTAAATTACATTGAAGGTTCTGGAGACAAGCGCTGGAGCAGTAAGGATTTTCCTTGGACAAAACAGTTGGAGGTTAATAATAAAAAAGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGAGAGATCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAAAGTCTGACCTATCAGCTGCCAGCTCTTATCTGTCCTGGCATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATTATGCATCTACTACAGGCAAATATATCCGCTGCTTACTTAAGTGCTAATATGGAATGGACTGAACAGCAAGAGATCTTTAGAGAACTTAATTCCGAATATTGTAATTATAAGTTGTTGTATGTAACACCAGAAAAGATTGCCAAAAGTGACGTGCTTTTACGAAACCTGGAGAGTTTACATGCTCGAGAATTGCTTGCAAGAATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGCATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACTGCAACAGCTAGTGTCAAAGAGGACGTTGTGCAAGCATTAGGACTTGTTAACTGCATTATTTTCCGGCAGAGTTTTAATCGCCCAAACTTAAGGTATTCTGTCCTTCCCAAGACCAAAAAGTGTTTGGAAGACGTTGACAAATTCATTAGGGAAAACCATTTTGATGAGTGTGGCATTATATATTGCCTTTCTCGAATGGACTGTGAAAAGGTTGCTGAAAAGTTGCAGGAGTTTGGACATAAGTGTGCATTTTATCATGGTAACATGGATCCTGCTCAACGTGCCTTTGTTCAAAAGCAGTGGAGTAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAGCCTGATGTTCGCTTCGTAATCCATCATTCCCTTCCAAAATCTATTGAAGGTTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCTACGTTCTTCCTGTATATTATATTACAGCTACAGTGATTATATTCGAGTTAAGCATATGATAAGTCAAGGAGCAATAGAGCAAAGTTCAATGACATATGGATACAGTCGCTCAAATATGACAAATTCAGGAAGGATATTGGAAACAAACACTGAAAACCTTTTGCGAATGGTCAGTTATTGTGAAAATGACGTTGATTGTAGGCGTCTTCTGCAGCTTGCTCATTTTGGGGAGAAGTTTGATTCTTCAACATGTCAGAAAACATGTGATAATTGTTTGAAGAACACAAGTTTTATTGAGAAAGATGTCACCGAGATTGCAAAGCAATTGGTTGAACTGGTTAAGCTAACTGGGCAGAAGGTCTCATCATCACATATATTAGAAGTCTATCGTGGATCCTTAAGCCAGTTGGTCAAGAAACACCGTCATGATACTTTGAGCCTTCATAGTGCTGGGAAGCATCTAGCTAAGGGTGAGGCTTCTCGAGTATTGCATCATCTTGTTGTAGAGGATTTTCTTGTGGAGGAGGTTAAAAAAAGTGATTTTTATGGATCAGTATCATCAATATTGAAGGTAAATGACCCCAAGGTCCGCAACCTGTTGCTCGGGGGCCAGAGAATTATACTGAGGTTCCCATCGTCCATAAAAGCATCAAAATTAGCGAAGTTCGAGTTCACTCCAGCTAAAGGATCTCTGACATCTGGAAAACAAAATAGTCATCAAATTGATACTCCTGCTCAGCCCCAAACTCAAGTTGACATGAATCTTTCAGCAAAGTTATACTCAGCATTGCGGTTGCTGCGGGCAACTATTCTTGGTGAAGCTGGAGACGATGTCTTGGCTCACCACGTATTCTGTAATTCTCTGTTGCAGCTGATGAGCAAGAAAGTACCAAGAACAAAGGAAGAACTCCTTGAACTCAATGGCATGAGCAAGGCCAAGGTAAGCAATTATGGTGATCAGATACTGAAAACCATTGAAAATACTATTAATGAGTATTACAAGTTGGATAAAAGCAGCAATGGCAGTGCTGATTCTGCAAAAAGGAGACGAGATGCAAATGGAGGCCTAGATAGAAATCTTGAGGATGATGATGATGAGTTGACTAAAAGTACTGGTCGCTTAAAGAAAAGGACAGTGCAGAGAAATAATAAAAAGGCTGAGATATACCATTCTGAAGAGGAAGATAATTACTATGGATGTCTTGATGAGGACCTAGATTTTGACAATATAGAAAATGAAGCACTAAATAGAATAAACAGTAGGAATGCTAATGGAAGAGTACTGCCTCAATGGACACCATCTTGA 3531 0.3993 MDAQQTTNRMCSITQMKQFQSNSAGGLHCQGKKPSVNWSQHAEAHQNFSCQLKFLSSNFLFSLPTQKPQNGEPTDGRFVINQNPNIQTSQRAQVEKAWLALSSLQNSSRSYPQPGKTVQVTPRHHEDRRMNPLQRTHENDKLKPPDVTTTPIVTNHNSQVLDSSVNKHIKHAGQINEASTGMVVDIDDDDILETIDIDQIVENYQSSSTPKPPISKFPHITPTADTNNFAREGGNCLPPELCIDCNHGYKLGLCPEATSHLQEFKDNLIAISNELLDNVDNLTSLQLAKLRQDRSQLNMKIQQLEKYIHSNNLEDRKKSNLFASTAPTSFVYETPQQTLHSNATKTYESQDYVGNGTCGSLFQSLSFSCADTYGVSSGPVSREAFIPKIIEVNYIEGSGDKRWSSKDFPWTKQLEVNNKKVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANISAAYLSANMEWTEQQEIFRELNSEYCNYKLLYVTPEKIAKSDVLLRNLESLHARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLRYSVLPKTKKCLEDVDKFIRENHFDECGIIYCLSRMDCEKVAEKLQEFGHKCAFYHGNMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCILYYSYSDYIRVKHMISQGAIEQSSMTYGYSRSNMTNSGRILETNTENLLRMVSYCENDVDCRRLLQLAHFGEKFDSSTCQKTCDNCLKNTSFIEKDVTEIAKQLVELVKLTGQKVSSSHILEVYRGSLSQLVKKHRHDTLSLHSAGKHLAKGEASRVLHHLVVEDFLVEEVKKSDFYGSVSSILKVNDPKVRNLLLGGQRIILRFPSSIKASKLAKFEFTPAKGSLTSGKQNSHQIDTPAQPQTQVDMNLSAKLYSALRLLRATILGEAGDDVLAHHVFCNSLLQLMSKKVPRTKEELLELNGMSKAKVSNYGDQILKTIENTINEYYKLDKSSNGSADSAKRRRDANGGLDRNLEDDDDELTKSTGRLKKRTVQRNNKKAEIYHSEEEDNYYGCLDEDLDFDNIENEALNRINSRNANGRVLPQWTPS 1176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00357 1176 CDD DEXHc_RecQ 418 617 - -
Arst4g00357 1176 SMART ultradead3 423 626 IPR014001 -
Arst4g00357 1176 MobiDBLite consensus disorder prediction 106 128 - -
Arst4g00357 1176 FunFam Bloom syndrome, RecQ helicase 618 838 - -
Arst4g00357 1176 Coils Coil 287 307 - -
Arst4g00357 1176 SMART RQC_2 843 954 IPR018982 GO:0006260|GO:0006281|GO:0043138
Arst4g00357 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 759 IPR027417 -
Arst4g00357 1176 Pfam Helicase conserved C-terminal domain 636 740 IPR001650 -
Arst4g00357 1176 PANTHER DNA HELICASE RECQ FAMILY MEMBER 398 1082 - -
Arst4g00357 1176 FunFam ATP-dependent DNA helicase RecQ 400 617 - -
Arst4g00357 1176 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 549 558 IPR002464 -
Arst4g00357 1176 Gene3D - 841 951 IPR036388 -
Arst4g00357 1176 MobiDBLite consensus disorder prediction 1083 1115 - -
Arst4g00357 1176 Pfam HRDC domain 999 1067 IPR002121 GO:0003676
Arst4g00357 1176 Gene3D HRDC domain 991 1078 IPR044876 -
Arst4g00357 1176 CDD SF2_C_RecQ 618 750 - -
Arst4g00357 1176 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 435 610 IPR014001 -
Arst4g00357 1176 MobiDBLite consensus disorder prediction 1078 1124 - -
Arst4g00357 1176 Gene3D - 618 837 IPR027417 -
Arst4g00357 1176 SUPERFAMILY HRDC-like 998 1071 IPR010997 GO:0000166|GO:0044237
Arst4g00357 1176 Pfam RQC domain 840 955 IPR018982 GO:0006260|GO:0006281|GO:0043138
Arst4g00357 1176 Gene3D - 391 617 IPR027417 -
Arst4g00357 1176 Pfam DEAD/DEAH box helicase 429 597 IPR011545 GO:0003676|GO:0005524
Arst4g00357 1176 SMART hrdc7 995 1077 IPR002121 GO:0003676
Arst4g00357 1176 SMART helicmild6 660 741 IPR001650 -
Arst4g00357 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 886 IPR027417 -
Arst4g00357 1176 ProSiteProfiles HRDC domain profile. 995 1077 IPR002121 GO:0003676
Arst4g00357 1176 Pfam RecQ zinc-binding 752 834 IPR032284 -
Arst4g00357 1176 NCBIfam RecQ family ATP-dependent DNA helicase 419 894 IPR004589 GO:0004386|GO:0006310
Arst4g00357 1176 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 635 785 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00357 Arst-Chr4 2703367 2711120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00357 649 764 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 1.90e-07 53.1