Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00356 ATGGACGCTCAACAAACTACCAACAGAATGTGTTCTATAACTCAAATGAAGCAATTCCAATCAAATTCTGCGGGTGGTCTTCATTGTCAAGGTAAAAAGCCAAGTGTCAATTGGTCGCAACATGCCGAAGCACATCAAAACTTTTCCTGCCAGCTCAAGTTCTTGAGCTCCAATTTCCTATTCTCTTTGCCAACACAGAAGCCTCAAAATGGAGAACCAACGGATGGGAGGTTTGTAATCAATCAGAATCCAAATATTCAGACTTCACAGAGGGCACAAGTTGAGAAGGCTTGGCTTGCTCTTTCAAGTCTCCAGAATTCTAGCAGGAGCTATCCCCAACCTGGAAAAACTGTTCAAGTTACTCCTCGGCACCATGAAGACAGGCGAATGAACCCCTTACAAAGGACCCATGAGAACGATAAGCTTAAGCCTCCTGATGTTACCACAACTCCAATTGTTACTAATCATAATTCACAAGTTTTGGACAGTTCAGTGAACAAGCATATCAAGCATGCTGGCCAAATCAACGAGGCATCAACAGGCATGGTTGTTGACATTGATGATGATGACATACTTGAGACCATTGATATTGATCAAATAGTGGAGAACTATCAGTCATCTTCCACACCCAAACCTCCAATTTCCAAATTCCCTCATATTACACCAACTGCAGATACAAATAATTTTGCTAGAGAGGGGGGTAACTGTTTGCCACCAGAACTTTGTATAGATTGCAATCATGGTTACAAGTTAGGGCTTTGTCCTGAAGCAACAAGTCATTTGCAGGAATTTAAGGATAATCTGATTGCTATTTCTAATGAACTACTTGACAATGTTGACAACCTTACTTCTTTGCAGTTGGCAAAGCTTCGGCAAGATAGGTCACAGCTGAATATGAAAATTCAGCAGCTTGAAAAATATATTCATTCCAATAATCTTGAGGACAGGAAAAAGTCAAATTTGTTTGCATCCACGGCACCTACATCATTTGTATATGAAACTCCTCAGCAGACTCTCCACAGTAATGCAACAAAGACATATGAATCTCAGGATTATGTGGGTAATGGGACATGTGGGTCATTGTTCCAGTCTCTTTCATTCTCTTGTGCAGATACATATGGCGTGTCATCAGGTCCAGTGTCGAGGGAAGCTTTCATCCCAAAGATTATTGAAGTAAATTACATTGAAGGTTCTGGAGACAAGCGCTGGAGCAGTAAGGATTTTCCTTGGACAAAACAGTTGGAGGTTAATAATAAAAAAGTTTTTGGAAATCACTCATTCCGCCCCAATCAAAGAGAGATCATTAATGCCACAATGAGTGGATGTGATGTTTTTGTTTTGATGCCCACTGGTGGAGGAAAAAGTCTGACCTATCAGCTGCCAGCTCTTATCTGTCCTGGCATAACATTAGTAATTTCTCCCCTTGTGTCCCTTATTCAAGATCAAATTATGCATCTACTACAGGCAAATATATCCGCTGCTTACTTAAGTGCTAATATGGAATGGACTGAACAGCAAGAGATCTTTAGAGAACTTAATTCCGAATATTGTAATTATAAGTTGTTGTATGTAACACCAGAAAAGATTGCCAAAAGTGACGTGCTTTTACGAAACCTGGAGAGTTTACATGCTCGAGAATTGCTTGCAAGAATTGTAATTGATGAGGCTCACTGTGTGAGTCAATGGGGGCATGATTTTAGACCAGATTATCAGGGACTTGGCATATTGAAACAGAAATTCCCAAATACTCCTGTTTTAGCTTTAACAGCTACTGCAACAGCTAGTGTCAAAGAGGACGTTGTGCAAGCATTAGGACTTGTTAACTGCATTATTTTCCGGCAGAGTTTTAATCGCCCAAACTTAAGGTATTCTGTCCTTCCCAAGACCAAAAAGTGTTTGGAAGACGTTGACAAATTCATTAGGGAAAACCATTTTGATGAGTGTGGCATTATATATTGCCTTTCTCGAATGGACTGTGAAAAGGTTGCTGAAAAGTTGCAGGAGTTTGGACATAAGTGTGCATTTTATCATGGTAACATGGATCCTGCTCAACGTGCCTTTGTTCAAAAGCAGTGGAGTAAAGATGAGATCAATATAATTTGTGCTACTGTGGCATTTGGAATGGGTATTAACAAGCCTGATGTTCGCTTCGTAATCCATCATTCCCTTCCAAAATCTATTGAAGGTTATCATCAGGAATGTGGACGAGCTGGTAGAGATGGTCTACGTTCTTCCTGTATATTATATTACAGCTACAGTGATTATATTCGAGTTAAGCATATGATAAGTCAAGGAGCAATAGAGCAAAGTTCAATGACATATGGATACAGTCGCTCAAATATGACAAATTCAGGAAGGATATTGGAAACAAACACTGAAAACCTTTTGCGAATGCTTGCTCATTTTGGGGAGAAGTTTGATTCTTCAACATGTCAGAAAACATGTGATAATTGTTTGAAGAACACAAGTTTTATTGAGAAAGATGTCACCGAGATTGCAAAGCAATTGGTTGAACTGGTTAAGCTAACTGGGCAGAAGGTCTCATCATCACATATATTAGAAGTCTATCGTGGATCCTTAAGCCAGTTGGTCAAGAAACACCGTCATGATACTTTGAGCCTTCATAGTGCTGGGAAGCATCTAGCTAAGGGTGAGGCTTCTCGAGTATTGCATCATCTTGTTGTAGAGGATTTTCTTGTGGAGGAGGTTAAAAAAAGTGATTTTTATGGATCAGTATCATCAATATTGAAGGTAAATGACCCCAAGGTCCGCAACCTGTTGCTCGGGGGCCAGAGAATTATACTGAGGTTCCCATCGTCCATAAAAGCATCAAAATTAGCGAAGTTCGAGTTCACTCCAGCTAAAGGATCTCTGACATCTGGAAAACAAAATAGTCATCAAATTGATACTCCTGCTCAGCCCCAAACTCAAGTTGACATGAATCTTTCAGCAAAGTTATACTCAGCATTGCGGTTGCTGCGGGCAACTATTCTTGGTGAAGCTGGAGACGATGTCTTGGCTCACCACGTATTCTGTAATTCTCTGTTGCAGCTGATGAGCAAGAAAGTACCAAGAACAAAGGAAGAACTCCTTGAACTCAATGGCATGAGCAAGGCCAAGGTAAGCAATTATGGTGATCAGATACTGAAAACCATTGAAAATACTATTAATGAGTATTACAAGTTGGATAAAAGCAGCAATGGCAGTGCTGATTCTGCAAAAAGGAGACGAGATGCAAATGGAGGCCTAGATAGAAATCTTGAGGATGATGATGATGAGTTGACTAAAAGTACTGGTCGCTTAAAGAAAAGGACAGTGCAGAGAAATAATAAAAAGGCTGAGATATACCATTCTGAAGAGGAAGATAATTACTATGGATGTCTTGATGAGGACCTAGATTTTGACAATATAGAAAATGAAGCACTAAATAGAATAAACAGTAGGAATGCTAATGGAAGAGTACTGCCTCAATGGACACCATCTTGA 3486 0.399 MDAQQTTNRMCSITQMKQFQSNSAGGLHCQGKKPSVNWSQHAEAHQNFSCQLKFLSSNFLFSLPTQKPQNGEPTDGRFVINQNPNIQTSQRAQVEKAWLALSSLQNSSRSYPQPGKTVQVTPRHHEDRRMNPLQRTHENDKLKPPDVTTTPIVTNHNSQVLDSSVNKHIKHAGQINEASTGMVVDIDDDDILETIDIDQIVENYQSSSTPKPPISKFPHITPTADTNNFAREGGNCLPPELCIDCNHGYKLGLCPEATSHLQEFKDNLIAISNELLDNVDNLTSLQLAKLRQDRSQLNMKIQQLEKYIHSNNLEDRKKSNLFASTAPTSFVYETPQQTLHSNATKTYESQDYVGNGTCGSLFQSLSFSCADTYGVSSGPVSREAFIPKIIEVNYIEGSGDKRWSSKDFPWTKQLEVNNKKVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANISAAYLSANMEWTEQQEIFRELNSEYCNYKLLYVTPEKIAKSDVLLRNLESLHARELLARIVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIIFRQSFNRPNLRYSVLPKTKKCLEDVDKFIRENHFDECGIIYCLSRMDCEKVAEKLQEFGHKCAFYHGNMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGLRSSCILYYSYSDYIRVKHMISQGAIEQSSMTYGYSRSNMTNSGRILETNTENLLRMLAHFGEKFDSSTCQKTCDNCLKNTSFIEKDVTEIAKQLVELVKLTGQKVSSSHILEVYRGSLSQLVKKHRHDTLSLHSAGKHLAKGEASRVLHHLVVEDFLVEEVKKSDFYGSVSSILKVNDPKVRNLLLGGQRIILRFPSSIKASKLAKFEFTPAKGSLTSGKQNSHQIDTPAQPQTQVDMNLSAKLYSALRLLRATILGEAGDDVLAHHVFCNSLLQLMSKKVPRTKEELLELNGMSKAKVSNYGDQILKTIENTINEYYKLDKSSNGSADSAKRRRDANGGLDRNLEDDDDELTKSTGRLKKRTVQRNNKKAEIYHSEEEDNYYGCLDEDLDFDNIENEALNRINSRNANGRVLPQWTPS 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00356 1161 SMART RQC_2 828 939 IPR018982 GO:0006260|GO:0006281|GO:0043138
Arst4g00356 1161 CDD DEXHc_RecQ 418 617 - -
Arst4g00356 1161 SUPERFAMILY HRDC-like 983 1056 IPR010997 GO:0000166|GO:0044237
Arst4g00356 1161 SMART ultradead3 423 626 IPR014001 -
Arst4g00356 1161 MobiDBLite consensus disorder prediction 106 128 - -
Arst4g00356 1161 Coils Coil 287 307 - -
Arst4g00356 1161 NCBIfam RecQ family ATP-dependent DNA helicase 419 879 IPR004589 GO:0004386|GO:0006310
Arst4g00356 1161 FunFam Bloom syndrome, RecQ helicase 618 823 - -
Arst4g00356 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 402 759 IPR027417 -
Arst4g00356 1161 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 549 558 IPR002464 -
Arst4g00356 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 871 IPR027417 -
Arst4g00356 1161 Pfam RQC domain 825 940 IPR018982 GO:0006260|GO:0006281|GO:0043138
Arst4g00356 1161 ProSiteProfiles HRDC domain profile. 980 1062 IPR002121 GO:0003676
Arst4g00356 1161 Pfam Helicase conserved C-terminal domain 636 740 IPR001650 -
Arst4g00356 1161 PANTHER DNA HELICASE RECQ FAMILY MEMBER 398 1067 - -
Arst4g00356 1161 SMART hrdc7 980 1062 IPR002121 GO:0003676
Arst4g00356 1161 Pfam DEAD/DEAH box helicase 429 597 IPR011545 GO:0003676|GO:0005524
Arst4g00356 1161 FunFam ATP-dependent DNA helicase RecQ 400 617 - -
Arst4g00356 1161 CDD SF2_C_RecQ 618 750 - -
Arst4g00356 1161 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 435 610 IPR014001 -
Arst4g00356 1161 Gene3D - 391 617 IPR027417 -
Arst4g00356 1161 MobiDBLite consensus disorder prediction 1063 1109 - -
Arst4g00356 1161 Pfam HRDC domain 984 1052 IPR002121 GO:0003676
Arst4g00356 1161 SMART helicmild6 660 741 IPR001650 -
Arst4g00356 1161 Gene3D HRDC domain 976 1063 IPR044876 -
Arst4g00356 1161 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 635 785 IPR001650 -
Arst4g00356 1161 Gene3D - 826 936 IPR036388 -
Arst4g00356 1161 Gene3D - 618 822 IPR027417 -
Arst4g00356 1161 MobiDBLite consensus disorder prediction 1068 1100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00356 Arst-Chr4 2703367 2711120 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00356 649 764 Eukaryotic Initiation Factors Gene Family AT3G19760 25.000 1.90e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00356 K10901 - gmx:100800006 1651.72