Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00339 ATGCGAGCTTCATGGGCTGATTTGGCTGCAAATTCTGCAGCTGAGGTTGCTGGTTCTGGTACTTCAGCCAACAATGCCGGGGCTAGTAACAGTTTACCTCCATCCCGGTCTACTTACGTGCCTCCGCATCTGAGGAACCGGCCGCCTTTGGCTGAATCACCTGCTCCTCCGTATAGTGGCAGTACAACTTCTGGTTCTGGGGCTGGTGCAGTTAATTCTGGATCACGTTGGGGTGCACCTCGTGGCGATTACCGTTCAGGGGGGAACAAAAGTGGATGGGGGAGCAGAAGTGGGGGTTGGGATCGTGGGAGGGACCGTGAGGTCAATCCGTTTGGAGATCAGGATGACACAGAGCAGGAATTTGGTGAGCAAGAGAACACGGGGATAAATTTTGATGCCTACGAGGACATTCCGGTGGAGACTAGCGGGGATAATGTGCCACCGCCTGTGAATACATTTGCTGAGATTGACTTGGGTGAAGCGCTTAATCGTAATATAATGAGGTGCAAATATGTTAAGCCGACGCCTGTTCAGCGGCATGCCATACCAATTTCCCTTGCTGGAAGGGATTTGATGGCCTGTGCTCAGACTGGTTCTGGAAAGACAGCTGCTTTCTGTTTCCCAATTATCAGTGGAATTTTGAGGGGACAACCTATGCAAAGGCCACCTCGTGGTGTGCGTACTGTGTATCCACTTGCCCTTGTTCTCTCACCAACTAGGGAGCTATCAATGCAAATACATGACGAGGCTAGGAAGTTTGCATATCAAACAGGCGTTAAGGTGGTGGTTGCTTATGGTGGAGCTCCAATAAACCATCAGCTAAGAGAGCTTGAGAAGGGGGTGGACATTCTTGTTGCAACTCCTGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTTTCACTTCAGATGATAAGATATCTTGCCCTAGATGAGGCAGATAGGATGCTGGATATGGGTTTTGAGCCGCAAATAAGGAAGATTGTCGAACAAATGGATATGCCTCCTCCAGGTGTAAGACAGACTATGCTATTCAGTGCCACGTTTCCTAAAGAGATACAGAGACTAGCCTCGGATTTCCTGTCAAAATACATTTTTCTTGCTGTTGGAAGAGTTGGGTCAAGTACCGATTTAATTGTCCAAAGAGTTGAGTATGTTCAGGAGTCTGACAAGAGAAGTCATCTCATGGATCTTCTTCATGCACAGAGAGCAAATGGTGTGCAAGGAAAGCAAGCTTTGACATTAGTTTTTGTGGAGACAAAGAAGGGAGCTGATGCACTGGAACATTGGCTGTGTATGAATGGTTTTCCAGCTACTACCATTCATGGAGACCGGACTCAACAGGAAAGAGAAATGGCATTAAGGTCATTTAAAAGTGGCAACACGCCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCTCATGTCGCCCATGTTGTTAACTTTGACCTTCCCAATGATATTGATGACTATGTACACCGTATCGGAAGGACGGGACGTGCTGGAAAGAAAGGCCTCGCAACTGCGTTCTTTAATGACAACAATGCCTCCCTTGCAAGGTCTTTGGCAGAACTAATGCAGGAAGCAAATCAAGAAGTGCCAGCATGGCTCTCACGGTATGCTGCTCGATCTTCATTTGGAGGTAGGAACCGTCGTTCGGGAGGAGGGCGTTTTGGTGGCCGAGACTTTCGAAGAGAAGGTTCTTTCAACAGGGGTGGTTCTGATTATTACAATGCCGGAAACAGCAGTGGTGGATATGGGGCGTCGGGTGGATATGGTCCCGGTGGAACCAGTGCATGGGATTAA 1818 0.484 MRASWADLAANSAAEVAGSGTSANNAGASNSLPPSRSTYVPPHLRNRPPLAESPAPPYSGSTTSGSGAGAVNSGSRWGAPRGDYRSGGNKSGWGSRSGGWDRGRDREVNPFGDQDDTEQEFGEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGEALNRNIMRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRGQPMQRPPRGVRTVYPLALVLSPTRELSMQIHDEARKFAYQTGVKVVVAYGGAPINHQLRELEKGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGVRQTMLFSATFPKEIQRLASDFLSKYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFVETKKGADALEHWLCMNGFPATTIHGDRTQQEREMALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKKGLATAFFNDNNASLARSLAELMQEANQEVPAWLSRYAARSSFGGRNRRSGGGRFGGRDFRREGSFNRGGSDYYNAGNSSGGYGASGGYGPGGTSAWD 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00339 605 SMART helicmild6 425 506 IPR001650 -
Arst4g00339 605 MobiDBLite consensus disorder prediction 584 605 - -
Arst4g00339 605 FunFam Probable ATP-dependent RNA helicase DDX4 114 369 - -
Arst4g00339 605 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 378 545 IPR001650 -
Arst4g00339 605 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 121 545 - -
Arst4g00339 605 MobiDBLite consensus disorder prediction 56 71 - -
Arst4g00339 605 MobiDBLite consensus disorder prediction 15 37 - -
Arst4g00339 605 CDD SF2_C_DEAD 379 515 - -
Arst4g00339 605 Pfam Helicase conserved C-terminal domain 391 506 IPR001650 -
Arst4g00339 605 Gene3D - 370 549 IPR027417 -
Arst4g00339 605 MobiDBLite consensus disorder prediction 99 113 - -
Arst4g00339 605 Pfam DEAD/DEAH box helicase 175 356 IPR011545 GO:0003676|GO:0005524
Arst4g00339 605 CDD DEADc_DDX3_DDX4 152 373 IPR044763 GO:0003724|GO:0005524
Arst4g00339 605 Gene3D - 107 369 IPR027417 -
Arst4g00339 605 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 367 IPR014001 -
Arst4g00339 605 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 232 522 IPR027417 -
Arst4g00339 605 FunFam ATP-dependent RNA helicase RhlB 370 549 - -
Arst4g00339 605 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Arst4g00339 605 MobiDBLite consensus disorder prediction 1 126 - -
Arst4g00339 605 SMART ultradead3 170 382 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00339 Arst-Chr4 2568255 2573332 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00339 149 538 Eukaryotic Initiation Factors Gene Family AT3G19760 32.225 5.71e-64 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00339 K11594 - gmx:100795756 966.066