Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Arst4g00329 | ATGTACCAGTCACTCGCTGACACGGTTTTTGATTTGTATCCTTCCAGAGGCTGCTTTCATTCACCTCACAACCATAAGAATCTATGCTTCAGCGCACCACCAAGACAGACAGATCAAAGAACGAAGAGTAATATGTTAAAGGCAAAGGTATTCAATGGCGCGAACGTGTTCATGTCACGGAACCTGGTTCCGCCTGAGGTATTCGACACTCTTCATGATGTGCTCAAAGACAACGGTGCACAAGTGCACCTCTGCTGCGACCCTTCCCGCAATGGCCCCAATGATTACCATGTCATTTCTTGCAGTAAACATGAGAAGTTTGAGGATCTTAAAGCCAAAGGCTGCAAATTGCTTGGACCCAGATGTGTTCTTTCATGTGCTAAAGAACTTAAGCCTTTGCCTAAAGTTGGATTTACGTGTTGCCTTGCCATGGATGGTGTCAAAATACTTGCATCTGGCTTCGATACCAATGAGAAGCTTAAGATAGAAGAGATTGTGACTGAAATGGGTGGTCTTCTACATACTAAAGCATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTGGCTGCAAAATACAAGTGGGCTTTGAATATACTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGAGGAGCATCGTGTTGTTCCTCAGGAGTCATACAAGGTCCTTCCTTTCTCCGGGCTGACGATTTGTGTTACTGGGATTCCAGCAGATAAACGCAAAGAGATTGAGAAGCTTACTTTACAAAATGGTGGAAAGTACTCTGCAGAATTGACAAAGAAGTGCACTCATTTGATTTCTGATGCTCCTGAAGGTGACAAATATAAGGTAGCAAAACGCTGGGGCCATATTTATACTGTGACGAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAACGAGGAGTCCTACCCAGTTCAGAATGGACCTGTATCTTCACAGAAAGTGATTAAGGACATAGATGTACAGCATAGCCAAGAAACGGATATTAGTAAATTTCAATCTGGAGTATCCTCAGCTGTTACAGATCCAAACATGCCGGTTTCTTCTTATGCTGAGTTTGTAGATAAAGACCAAGAAGCTACATGTTCAGAATACACGTCTTCTTTTACAAATGTTGCTACATTTGTCAAAGATACAAATGCTGAAGCACCTCGAGGAAAGCCCAGTGATGAATTGAACCTTGATGGCCCTGTTGCCAATGATTCTGAATCTGATGATAATGATCTGTACTTATCCGAGTGCAAAATCTTTCTTGTTGGCTTTGAAGCTTCTGACATGCGGAAACTAGTTAATATGGTGCGGAAAGGTGGAGGTTCCCGATATATGTCTTTAAATGCCAAGCTGACACACATAGTTGTTGGAAACCCTTCAGAATCGGAAAAGAAGGATGTAAGGAGTCTTGCTGCTTTAGGTGTCATTTATGTTGTTAAAACGTCCTGGCTTGAAGATTGTAACCGTGAAAAGAAAGAAGTCCCTGTTCTAAGGAGACACATTGCATCTGATCTACTTGTTCCAAAAGGAAGCATTGTCAAAGGAGCATCAACAAGCATGTCCATGGTTCAAGGTAAAAGCTGTGGTTTTCCTAAAAGCTTGCAGAGTGCTCAGGTGGTGGGAGTTATGGCCTCTGGAGGTGTAAAGCCAGTATCTTTGGGGAAAGATAAACTGGATGTGGGTACAAGTGTTCACTCATTCAGTAAAGCAATGGGGCAAAATCAACATGCTTCTAATAAGATGACAGCTCCAAAGATGACAGTGACACAACGTGATCCCAGTGTAGAATATGTTAAGTCCACAACAGTTTTCAAAGGGAAAATATTTTGTTTCTCGGATTTATTTCCTGAAGAAAGGAGAGCTGAGGTCATCGAATGGATACATCAAGGGGGAGGACAAGTAATAAGTGGGAAAGTAAAACATGGTGTCCATTTTACTGTTGAATGTCATGGTGTAACACCCATGATGACAGCAAATTCCCAAAGTACATATGTTTCGAGTCATTGGATACGATCTTGCTTACAGGCCGGATACCTAATGGATGTTGGCAGTCATATTCTTTATTCTCCACTTTCCTGTCGCGTTCCCTTGCCCGGGTTTGAAAGCTTTCGGTTTTGTGTTTCGCAATATGAGGAAAAAGAAAGAATTCTACTACGGAACTTGTGTTTTGTTTTGGGAGCTAAATTTGTGGAGAAGTTAACGAAGAAGGTCAGCCATTTGTTGTGTAAATTCAAGAATGGGCCCAAGTATGATGCTGCTTGTAAATGGGGGATCCGGTCAGTTACTGCCGAATGGCTGTTTGAATGTGTCAAACAGAATGGAGTTGTTGCCATAGACCATTTTTTACCAAAAGAAGTCACTGCTCAAGATCGGGAGGCAGGAATTTGTACTGTGAGTCAATTTCCTACTCAGGCCGTTCAAATGATAAGTGATCTGACGTCCCAGTATCCGAATCAATCACAAAATTCGACAGACAAAGTAAATAGAGGCATATATAGCGGACTTGCCAGTAATGGGACCGATTTAAAAATATCAAATATTCAGAGCAAAAAGGCAAGGCTTGTGGAAGATCCTGATAAGGTGTCTGCTGCAGTATATTCAGGTATTCATCATGTCAATGGAATGAATTTTTCTGAAGACAATACTGTAAAAGATGCTGGACAGGTTCCTCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGGAGACAAGCAAGATGCATGATCAGAGGTCACCAGGGAGTACAGGGCGTGAGAGAAGTATCTATTCATCTGGTTGTACTATCGTTTGTGAAGAGAATTCCAATCCTAATGCTGTGTTTGGATTGTCAAAACACTGGTTAAACAGAGGTGACAGAAAAGATGATGATGGTGAGGCTTCTCGAGACAGACGAGCTGAAACTTATGATCGATTTAGCGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAGGATTTGTCTGGAAGGCAAATGCTTATTGACAGAGTTCGAACTCGAAGTAGCGCACAATAA | 3048 | 0.4167 | MYQSLADTVFDLYPSRGCFHSPHNHKNLCFSAPPRQTDQRTKSNMLKAKVFNGANVFMSRNLVPPEVFDTLHDVLKDNGAQVHLCCDPSRNGPNDYHVISCSKHEKFEDLKAKGCKLLGPRCVLSCAKELKPLPKVGFTCCLAMDGVKILASGFDTNEKLKIEEIVTEMGGLLHTKASLDLNFVIVKNVLAAKYKWALNILKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLTICVTGIPADKRKEIEKLTLQNGGKYSAELTKKCTHLISDAPEGDKYKVAKRWGHIYTVTRKWFDQSIARRACLNEESYPVQNGPVSSQKVIKDIDVQHSQETDISKFQSGVSSAVTDPNMPVSSYAEFVDKDQEATCSEYTSSFTNVATFVKDTNAEAPRGKPSDELNLDGPVANDSESDDNDLYLSECKIFLVGFEASDMRKLVNMVRKGGGSRYMSLNAKLTHIVVGNPSESEKKDVRSLAALGVIYVVKTSWLEDCNREKKEVPVLRRHIASDLLVPKGSIVKGASTSMSMVQGKSCGFPKSLQSAQVVGVMASGGVKPVSLGKDKLDVGTSVHSFSKAMGQNQHASNKMTAPKMTVTQRDPSVEYVKSTTVFKGKIFCFSDLFPEERRAEVIEWIHQGGGQVISGKVKHGVHFTVECHGVTPMMTANSQSTYVSSHWIRSCLQAGYLMDVGSHILYSPLSCRVPLPGFESFRFCVSQYEEKERILLRNLCFVLGAKFVEKLTKKVSHLLCKFKNGPKYDAACKWGIRSVTAEWLFECVKQNGVVAIDHFLPKEVTAQDREAGICTVSQFPTQAVQMISDLTSQYPNQSQNSTDKVNRGIYSGLASNGTDLKISNIQSKKARLVEDPDKVSAAVYSGIHHVNGMNFSEDNTVKDAGQVPHAVPDVAAAIEDLLEETSKMHDQRSPGSTGRERSIYSSGCTIVCEENSNPNAVFGLSKHWLNRGDRKDDDGEASRDRRAETYDRFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSAQ | 1015 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Arst4g00329 | 1015 | Pfam | twin BRCT domain | 234 | 297 | IPR001357 | - | |
| Arst4g00329 | 1015 | Pfam | twin BRCT domain | 711 | 772 | IPR001357 | - | |
| Arst4g00329 | 1015 | ProSiteProfiles | BRCT domain profile. | 144 | 228 | IPR001357 | - | |
| Arst4g00329 | 1015 | Gene3D | BRCT domain | 230 | 316 | IPR036420 | - | |
| Arst4g00329 | 1015 | FunFam | Transcription coactivator | 603 | 700 | - | - | |
| Arst4g00329 | 1015 | Pfam | BRCA1 C Terminus (BRCT) domain | 144 | 214 | IPR001357 | - | |
| Arst4g00329 | 1015 | Pfam | BRCA1 C Terminus (BRCT) domain | 418 | 494 | IPR001357 | - | |
| Arst4g00329 | 1015 | FunFam | Transcription coactivator | 141 | 229 | - | - | |
| Arst4g00329 | 1015 | PANTHER | DNA REPLICATION REGULATOR DPB11-RELATED | 52 | 1014 | - | - | |
| Arst4g00329 | 1015 | SUPERFAMILY | BRCT domain | 609 | 696 | IPR036420 | - | |
| Arst4g00329 | 1015 | Gene3D | BRCT domain | 702 | 794 | IPR036420 | - | |
| Arst4g00329 | 1015 | Gene3D | BRCT domain | 141 | 229 | IPR036420 | - | |
| Arst4g00329 | 1015 | SUPERFAMILY | BRCT domain | 230 | 316 | IPR036420 | - | |
| Arst4g00329 | 1015 | ProSiteProfiles | BRCT domain profile. | 416 | 508 | IPR001357 | - | |
| Arst4g00329 | 1015 | ProSiteProfiles | BRCT domain profile. | 606 | 694 | IPR001357 | - | |
| Arst4g00329 | 1015 | FunFam | Transcription coactivator | 398 | 508 | - | - | |
| Arst4g00329 | 1015 | FunFam | DNA topoisomerase II binding protein 1 | 231 | 323 | - | - | |
| Arst4g00329 | 1015 | ProSiteProfiles | BRCT domain profile. | 226 | 315 | IPR001357 | - | |
| Arst4g00329 | 1015 | SUPERFAMILY | BRCT domain | 418 | 502 | IPR036420 | - | |
| Arst4g00329 | 1015 | Gene3D | BRCT domain | 408 | 505 | IPR036420 | - | |
| Arst4g00329 | 1015 | SUPERFAMILY | BRCT domain | 103 | 227 | IPR036420 | - | |
| Arst4g00329 | 1015 | SMART | BRCT_7 | 141 | 218 | IPR001357 | - | |
| Arst4g00329 | 1015 | SMART | BRCT_7 | 608 | 684 | IPR001357 | - | |
| Arst4g00329 | 1015 | SMART | BRCT_7 | 418 | 498 | IPR001357 | - | |
| Arst4g00329 | 1015 | SMART | BRCT_7 | 228 | 305 | IPR001357 | - | |
| Arst4g00329 | 1015 | SMART | BRCT_7 | 704 | 780 | IPR001357 | - | |
| Arst4g00329 | 1015 | SMART | BRCT_7 | 48 | 130 | IPR001357 | - | |
| Arst4g00329 | 1015 | MobiDBLite | consensus disorder prediction | 958 | 982 | - | - | |
| Arst4g00329 | 1015 | CDD | BRCT_TopBP1_rpt2_like | 705 | 780 | - | - | |
| Arst4g00329 | 1015 | MobiDBLite | consensus disorder prediction | 390 | 415 | - | - | |
| Arst4g00329 | 1015 | SUPERFAMILY | BRCT domain | 703 | 791 | IPR036420 | - | |
| Arst4g00329 | 1015 | Gene3D | BRCT domain | 81 | 138 | IPR036420 | - | |
| Arst4g00329 | 1015 | MobiDBLite | consensus disorder prediction | 958 | 995 | - | - | |
| Arst4g00329 | 1015 | CDD | BRCT | 147 | 214 | - | - | |
| Arst4g00329 | 1015 | Gene3D | BRCT domain | 604 | 699 | IPR036420 | - | |
| Arst4g00329 | 1015 | ProSiteProfiles | BRCT domain profile. | 707 | 790 | IPR001357 | - | |
| Arst4g00329 | 1015 | CDD | BRCT_TopBP1_rpt2_like | 230 | 305 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Arst4g00329 | Arst-Chr4 | 2482960 | 2491760 | Dispersed/Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Arst4g00329 | 45 | 1013 | Core DNA Replication Machinery Family | AT1G77320 | 50.000 | 0.0 | 934 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Arst4g00329 | K10728 | - | gmx:100804966 | 1312.75 |