Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00325 ATGGCGCGAACGTGTTCATGTCACGGAACCTGGTTCCGCCTGAGGTATTCGACACTCTTCATGATGTGCTCAAAGACAACGGTGCACAAGTGCACCTCTGCTGCGACCCTTCCCGCAATGGCCCCAATGATTACCATGTCATTTCTTGCAGTAAACATGAGAAGTTTGAGGATCTTAAAGCCAAAGGCTGCAAATTGCTTGGTACATGTTGAAAGACCCAGATGTGTTCTTTCATGTGCTAAAGAACTTAAGCCTTTGCCTAAAGTTGGATTTACGTGTTGCCTTGCCATGGATGGTGTCAAAATACTTGCATCTGGCTTCGATACCAATGAGAAGCTTAAGATAGAAGAGATTGTGACTGAAATGGGTGGTCTTCTACATACTAAAGCATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTGGCTGCAAAATACAAGTGGGCTTTGAATATACTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGAGGAGCATCGTGTTGTTCCTCAGGAGTCATACAAGGTCCTTCCTTTCTCCGGGCTGACGATTTGTGTTACTGGGATTCCAGCAGATAAACGCAAAGAGATTGAGAAGCTTACTTTACAAAATGGTGGAAAGTACTCTGCAGAATTGACAAAGAAGTGCACTCATTTGATTTCTGATGCTCCTGAAGGTGACAAATATAAGGTAGCAAAACGCTGGGGCCATATTTATACTGTGACGAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAACGAGGAGTCCTACCCAGTTCAGAATGGACCTGTATCTTCACAGAAAGTGATTAAGGACATAGATGTACAGCATAGCCAAGAAACGGATATTAGTAAATTTCAATCTGGAGTATCCTCAGCTGTTACAGATCCAAACATGCCGGTTTCTTCTTATGCTGAGTTTGTAGATAAAGACCAAGAAGCTACATGTTCAGAATACACGTCTTCTTTTACAAATGTTGCTACATTTGTCAAAGATACAAATGCTGAAGCACCTCGAGGAAAGCCCAGTGATGAATTGAACCTTGATGGCCCTGTTGCCAATGATTCTGAATCTGATGATAATGATCTGTACTTATCCGAGTGCAAAATCTTTCTTGTTGGCTTTGAAGCTTCTGACATGCGGAAACTAGTTAATATGGTGCGGAAAGGTGGAGGTTCCCGATATATGTCTTTAAATGCCAAGCTGACACACATAGTTGTTGGAAACCCTTCAGAATCGGAAAAGAAGGATGTAAGGAGTCTTGCTGCTTTAGGTGTCATTTATGTTGTTAAAACGTCCTGGCTTGAAGATTGTAACCGTGAAAAGAAAGAAGTCCCTGTTCTAAGGAGACACATTGCATCTGATCTACTTGTTCCAAAAGGAAGCATTGTCAAAGGAGCATCAACAAGCATGTCCATGGTTCAAGGTAAAAGCTGTGGTTTTCCTAAAAGCTTGCAGAGTGCTCAGGTGGTGGGAGTTATGGCCTCTGGAGGTGTAAAGCCAGTATCTTTGGGGAAAGATAAACTGGATGTGGGTACAAGTGTTCACTCATTCAGTAAAGCAATGGGGCAAAATCAACATGCTTCTAATAAGATGACAGCTCCAAAGATGACAGTGACACAACGTGATCCCAGTGTAGAATATGTTAAGTCCACAACAGTTTTCAAAGGGAAAATATTTTGTTTCTCGGATTTATTTCCTGAAGAAAGGAGAGCTGAGGTCATCGAATGGATACATCAAGGGGGAGGACAAGTAATAAGTGGGAAAGTAAAACATGGTGTCCATTTTACTGTTGAATGTCATGGTGTAACACCCATGATGACAGCAAATTCCCAAAGTACATATGTTTCGAGTCATTGGATACGATCTTGCTTACAGGCCGGATACCTAATGGATGTTGGCAGTCATATTCTTTATTCTCCACTTTCCTGTCGCGTTCCCTTGCCCGGGTTTGAAAGCTTTCGGTTTTGTGTTTCGCAATATGAGGAAAAAGAAAGAATTCTACTACGGAACTTGTGTTTTGTTTTGGGAGCTAAATTTGTGGAGAAGTTAACGAAGAAGGTCAGCCATTTGTTGTGTAAATTCAAGAATGGGCCCAAGTATGATGCTGCTTGTAAATGGGGGATCCGGTCAGTTACTGCCGAATGGCTGTTTGAATGTGTCAAACAGAATGGAGTTGTTGCCATAGACCATTTTTTACCAAAAGAAGTCACTGCTCAAGATCGGGAGGCAGGAATTTGTACTGTGAGTCAATTTCCTACTCAGGCCGTTCAAATGATAAGTGATCTGACGTCCCAGTATCCGAATCAATCACAAAATTCGACAGACAAAGTAAATAGAGGCATATATAGCGGACTTGCCAGTAATGGGACCGATTTAAAAATATCAAATATTCAGAGCAAAAAGGCAAGGCTTGTGGAAGATCCTGATAAGGTGTCTGCTGCAGTATATTCAGGTATTCATCATGTCAATGGAATGAATTTTTCTGAAGACAATACTGTAAAAGATGCTGGACAGGTTCCTCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGGAGACAAGCAAGATGCATGATCAGAGGTCACCAGGGAGTACAGGGCGTGAGAGAAGTATCTATTCATCTGGTTGTACTATCGTTTGTGAAGAGAATTCCAATCCTAATGCTGTGTTTGGATTGTCAAAACACTGGTTAAACAGAGGTGACAGAAAAGATGATGATGGTGAGGCTTCTCGAGACAGACGAGCTGAAACTTATGATCGATTTAGCGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAGGATTTGTCTGGAAGGCAAATGCTTATTGACAGAGTTCGAACTCGAAGTAGCGCACAATAA 2907 0.4159 MARTCSCHGTWFRLRYSTLFMMCSKTTVHKCTSAATLPAMAPMITMSFLAVNMRSLRILKPKAANCLVHVERPRCVLSCAKELKPLPKVGFTCCLAMDGVKILASGFDTNEKLKIEEIVTEMGGLLHTKASLDLNFVIVKNVLAAKYKWALNILKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLTICVTGIPADKRKEIEKLTLQNGGKYSAELTKKCTHLISDAPEGDKYKVAKRWGHIYTVTRKWFDQSIARRACLNEESYPVQNGPVSSQKVIKDIDVQHSQETDISKFQSGVSSAVTDPNMPVSSYAEFVDKDQEATCSEYTSSFTNVATFVKDTNAEAPRGKPSDELNLDGPVANDSESDDNDLYLSECKIFLVGFEASDMRKLVNMVRKGGGSRYMSLNAKLTHIVVGNPSESEKKDVRSLAALGVIYVVKTSWLEDCNREKKEVPVLRRHIASDLLVPKGSIVKGASTSMSMVQGKSCGFPKSLQSAQVVGVMASGGVKPVSLGKDKLDVGTSVHSFSKAMGQNQHASNKMTAPKMTVTQRDPSVEYVKSTTVFKGKIFCFSDLFPEERRAEVIEWIHQGGGQVISGKVKHGVHFTVECHGVTPMMTANSQSTYVSSHWIRSCLQAGYLMDVGSHILYSPLSCRVPLPGFESFRFCVSQYEEKERILLRNLCFVLGAKFVEKLTKKVSHLLCKFKNGPKYDAACKWGIRSVTAEWLFECVKQNGVVAIDHFLPKEVTAQDREAGICTVSQFPTQAVQMISDLTSQYPNQSQNSTDKVNRGIYSGLASNGTDLKISNIQSKKARLVEDPDKVSAAVYSGIHHVNGMNFSEDNTVKDAGQVPHAVPDVAAAIEDLLEETSKMHDQRSPGSTGRERSIYSSGCTIVCEENSNPNAVFGLSKHWLNRGDRKDDDGEASRDRRAETYDRFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSAQ 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00325 968 ProSiteProfiles BRCT domain profile. 660 743 IPR001357 -
Arst4g00325 968 CDD BRCT_TopBP1_rpt2_like 658 733 - -
Arst4g00325 968 SMART BRCT_7 94 171 IPR001357 -
Arst4g00325 968 SMART BRCT_7 371 451 IPR001357 -
Arst4g00325 968 SMART BRCT_7 657 733 IPR001357 -
Arst4g00325 968 SMART BRCT_7 561 637 IPR001357 -
Arst4g00325 968 SMART BRCT_7 181 258 IPR001357 -
Arst4g00325 968 MobiDBLite consensus disorder prediction 911 935 - -
Arst4g00325 968 Gene3D BRCT domain 95 182 IPR036420 -
Arst4g00325 968 ProSiteProfiles BRCT domain profile. 179 268 IPR001357 -
Arst4g00325 968 Gene3D BRCT domain 655 747 IPR036420 -
Arst4g00325 968 ProSiteProfiles BRCT domain profile. 369 461 IPR001357 -
Arst4g00325 968 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 63 967 - -
Arst4g00325 968 Gene3D BRCT domain 557 652 IPR036420 -
Arst4g00325 968 FunFam Transcription coactivator 94 182 - -
Arst4g00325 968 SUPERFAMILY BRCT domain 656 744 IPR036420 -
Arst4g00325 968 FunFam DNA topoisomerase II binding protein 1 184 276 - -
Arst4g00325 968 Pfam twin BRCT domain 187 250 IPR001357 -
Arst4g00325 968 Pfam twin BRCT domain 664 725 IPR001357 -
Arst4g00325 968 CDD BRCT 100 167 - -
Arst4g00325 968 CDD BRCT_TopBP1_rpt2_like 183 258 - -
Arst4g00325 968 ProSiteProfiles BRCT domain profile. 559 647 IPR001357 -
Arst4g00325 968 FunFam Transcription coactivator 351 461 - -
Arst4g00325 968 SUPERFAMILY BRCT domain 63 180 IPR036420 -
Arst4g00325 968 ProSiteProfiles BRCT domain profile. 97 181 IPR001357 -
Arst4g00325 968 FunFam Transcription coactivator 556 653 - -
Arst4g00325 968 MobiDBLite consensus disorder prediction 911 948 - -
Arst4g00325 968 MobiDBLite consensus disorder prediction 343 368 - -
Arst4g00325 968 SUPERFAMILY BRCT domain 183 269 IPR036420 -
Arst4g00325 968 Gene3D BRCT domain 183 269 IPR036420 -
Arst4g00325 968 Pfam BRCA1 C Terminus (BRCT) domain 371 447 IPR001357 -
Arst4g00325 968 Pfam BRCA1 C Terminus (BRCT) domain 97 167 IPR001357 -
Arst4g00325 968 SUPERFAMILY BRCT domain 371 455 IPR036420 -
Arst4g00325 968 Gene3D BRCT domain 361 458 IPR036420 -
Arst4g00325 968 SUPERFAMILY BRCT domain 562 649 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00325 Arst-Chr4 2482960 2494544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00325 56 966 Core DNA Replication Machinery Family AT1G77320 48.057 0.0 821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00325 K10728 - gmx:100804966 1172.92