Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00324 ATGTTAAAGGCAAAGGTATTCAATGGCGCGAACGTGTTCATGTCACGGAACCTGGTTCCGCCTGAGGTATTCGACACTCTTCATGATGTGCTCAAAGACAACGGTGCACAAGTGCACCTCTGCTGCGACCCTTCCCGCAATGGCCCCAATGATTACCATGTCATTTCTTGCAGTAAACATGAGAAGTTTGAGGATCTTAAAGCCAAAGGCTGCAAATTGCTTGGACCCAGATGTGTTCTTTCATGTGCTAAAGAACTTAAGCCTTTGCCTAAAGTTGGATTTACGTGTTGCCTTGCCATGGATGGTGTCAAAATACTTGCATCTGGCTTCGATACCAATGAGAAGCTTAAGATAGAAGAGATTGTGACTGAAATGGGTGGTCTTCTACATACTAAAGCATCACTGGATTTGAACTTTGTCATTGTGAAAAATGTTTTGGCTGCAAAATACAAGTGGGCTTTGAATATACTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAGAGGAGCATCGTGTTGTTCCTCAGGAGTCATACAAGGTCCTTCCTTTCTCCGGGCTGACGATTTGTGTTACTGGGATTCCAGCAGATAAACGCAAAGAGATTGAGAAGCTTACTTTACAAAATGGTGGAAAGTACTCTGCAGAATTGACAAAGAAGTGCACTCATTTGATTTCTGATGCTCCTGAAGGTGACAAATATAAGGTAGCAAAACGCTGGGGCCATATTTATACTGTGACGAGGAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAACGAGGAGTCCTACCCAGTTCAGAATGGACCTGTATCTTCACAGAAAGTGATTAAGGACATAGATGTACAGCATAGCCAAGAAACGGATATTAGTAAATTTCAATCTGGAGTATCCTCAGCTGTTACAGATCCAAACATGCCGGTTTCTTCTTATGCTGAGTTTGTAGATAAAGACCAAGAAGCTACATGTTCAGAATACACGTCTTCTTTTACAAATGTTGCTACATTTGTCAAAGATACAAATGCTGAAGCACCTCGAGGAAAGCCCAGTGATGAATTGAACCTTGATGGCCCTGTTGCCAATGATTCTGAATCTGATGATAATGATCTGTACTTATCCGAGTGCAAAATCTTTCTTGTTGGCTTTGAAGCTTCTGACATGCGGAAACTAGTTAATATGGTGCGGAAAGGTGGAGGTTCCCGATATATGTCTTTAAATGCCAAGCTGACACACATAGTTGTTGGAAACCCTTCAGAATCGGAAAAGAAGGATGTAAGGAGTCTTGCTGCTTTAGGTGTCATTTATGTTGTTAAAACGTCCTGGCTTGAAGATTGTAACCGTGAAAAGAAAGAAGTCCCTGTTCTAAGGAGACACATTGCATCTGATCTACTTGTTCCAAAAGGAAGCATTGTCAAAGGAGCATCAACAAGCATGTCCATGGTTCAAGGTAAAAGCTGTGGTTTTCCTAAAAGCTTGCAGAGTGCTCAGGTGGTGGGAGTTATGGCCTCTGGAGGTGTAAAGCCAGTATCTTTGGGGAAAGATAAACTGGATGTGGGTACAAGTGTTCACTCATTCAGTAAAGCAATGGGGCAAAATCAACATGCTTCTAATAAGATGACAGCTCCAAAGATGACAGTGACACAACGTGATCCCAGTGTAGAATATGTTAAGTCCACAACAGTTTTCAAAGGGAAAATATTTTGTTTCTCGGATTTATTTCCTGAAGAAAGGAGAGCTGAGGTCATCGAATGGATACATCAAGGGGGAGGACAAGTAATAAGTGGGAAAGTAAAACATGGTGTCCATTTTACTGTTGAATGTCATGGTGTAACACCCATGATGACAGCAAATTCCCAAAGTACATATGTTTCGAGTCATTGGATACGATCTTGCTTACAGGCCGGATACCTAATGGATGTTGGCAGTCATATTCTTTATTCTCCACTTTCCTGTCGCGTTCCCTTGCCCGGGTTTGAAAGCTTTCGGTTTTGTGTTTCGCAATATGAGGAAAAAGAAAGAATTCTACTACGGAACTTGTGTTTTGTTTTGGGAGCTAAATTTGTGGAGAAGTTAACGAAGAAGGTCAGCCATTTGTTGTGTAAATTCAAGAATGGGCCCAAGTATGATGCTGCTTGTAAATGGGGGATCCGGTCAGTTACTGCCGAATGGCTGTTTGAATGTGTCAAACAGAATGGAGTTGTTGCCATAGACCATTTTTTACCAAAAGAAGTCACTGCTCAAGATCGGGAGGCAGGAATTTGTACTGTGAGTCAATTTCCTACTCAGGCCGTTCAAATGATAAGTGATCTGACGTCCCAGTATCCGAATCAATCACAAAATTCGACAGACAAAGTAAATAGAGGCATATATAGCGGACTTGCCAGTAATGGGACCGATTTAAAAATATCAAATATTCAGAGCAAAAAGGCAAGGCTTGTGGAAGATCCTGATAAGGTGTCTGCTGCAGTATATTCAGGTATTCATCATGTCAATGGAATGAATTTTTCTGAAGACAATACTGTAAAAGATGCTGGACAGGTTCCTCATGCTGTTCCTGATGTTGCTGCTGCAATTGAGGACTTGTTAGAGGAGACAAGCAAGATGCATGATCAGAGGTCACCAGGGAGTACAGGGCGTGAGAGAAGTATCTATTCATCTGGTTGTACTATCGTTTGTGAAGAGAATTCCAATCCTAATGCTGTGTTTGGATTGTCAAAACACTGGTTAAACAGAGGTGACAGAAAAGATGATGATGGTGAGGCTTCTCGAGACAGACGAGCTGAAACTTATGATCGATTTAGCGAAACACAAACAGAATCTCAGGTTGTTGGTTATGAAGAGGATTTGTCTGGAAGGCAAATGCTTATTGACAGAGTTCGAACTCGAAGTAGCGCACAATAA 2916 0.4156 MLKAKVFNGANVFMSRNLVPPEVFDTLHDVLKDNGAQVHLCCDPSRNGPNDYHVISCSKHEKFEDLKAKGCKLLGPRCVLSCAKELKPLPKVGFTCCLAMDGVKILASGFDTNEKLKIEEIVTEMGGLLHTKASLDLNFVIVKNVLAAKYKWALNILKKPIVTYEWLKQCSEEHRVVPQESYKVLPFSGLTICVTGIPADKRKEIEKLTLQNGGKYSAELTKKCTHLISDAPEGDKYKVAKRWGHIYTVTRKWFDQSIARRACLNEESYPVQNGPVSSQKVIKDIDVQHSQETDISKFQSGVSSAVTDPNMPVSSYAEFVDKDQEATCSEYTSSFTNVATFVKDTNAEAPRGKPSDELNLDGPVANDSESDDNDLYLSECKIFLVGFEASDMRKLVNMVRKGGGSRYMSLNAKLTHIVVGNPSESEKKDVRSLAALGVIYVVKTSWLEDCNREKKEVPVLRRHIASDLLVPKGSIVKGASTSMSMVQGKSCGFPKSLQSAQVVGVMASGGVKPVSLGKDKLDVGTSVHSFSKAMGQNQHASNKMTAPKMTVTQRDPSVEYVKSTTVFKGKIFCFSDLFPEERRAEVIEWIHQGGGQVISGKVKHGVHFTVECHGVTPMMTANSQSTYVSSHWIRSCLQAGYLMDVGSHILYSPLSCRVPLPGFESFRFCVSQYEEKERILLRNLCFVLGAKFVEKLTKKVSHLLCKFKNGPKYDAACKWGIRSVTAEWLFECVKQNGVVAIDHFLPKEVTAQDREAGICTVSQFPTQAVQMISDLTSQYPNQSQNSTDKVNRGIYSGLASNGTDLKISNIQSKKARLVEDPDKVSAAVYSGIHHVNGMNFSEDNTVKDAGQVPHAVPDVAAAIEDLLEETSKMHDQRSPGSTGRERSIYSSGCTIVCEENSNPNAVFGLSKHWLNRGDRKDDDGEASRDRRAETYDRFSETQTESQVVGYEEDLSGRQMLIDRVRTRSSAQ 971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00324 971 SUPERFAMILY BRCT domain 659 747 IPR036420 -
Arst4g00324 971 ProSiteProfiles BRCT domain profile. 562 650 IPR001357 -
Arst4g00324 971 MobiDBLite consensus disorder prediction 346 371 - -
Arst4g00324 971 CDD BRCT_TopBP1_rpt2_like 661 736 - -
Arst4g00324 971 MobiDBLite consensus disorder prediction 914 938 - -
Arst4g00324 971 Pfam twin BRCT domain 190 253 IPR001357 -
Arst4g00324 971 Pfam twin BRCT domain 667 728 IPR001357 -
Arst4g00324 971 CDD BRCT 103 170 - -
Arst4g00324 971 FunFam Transcription coactivator 354 464 - -
Arst4g00324 971 MobiDBLite consensus disorder prediction 914 951 - -
Arst4g00324 971 Gene3D BRCT domain 560 655 IPR036420 -
Arst4g00324 971 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 970 - -
Arst4g00324 971 Gene3D BRCT domain 97 185 IPR036420 -
Arst4g00324 971 Gene3D BRCT domain 186 272 IPR036420 -
Arst4g00324 971 ProSiteProfiles BRCT domain profile. 372 464 IPR001357 -
Arst4g00324 971 SMART BRCT_7 374 454 IPR001357 -
Arst4g00324 971 SMART BRCT_7 184 261 IPR001357 -
Arst4g00324 971 SMART BRCT_7 564 640 IPR001357 -
Arst4g00324 971 SMART BRCT_7 97 174 IPR001357 -
Arst4g00324 971 SMART BRCT_7 660 736 IPR001357 -
Arst4g00324 971 SMART BRCT_7 4 86 IPR001357 -
Arst4g00324 971 SUPERFAMILY BRCT domain 374 458 IPR036420 -
Arst4g00324 971 CDD BRCT_TopBP1_rpt2_like 186 261 - -
Arst4g00324 971 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Arst4g00324 971 FunFam DNA topoisomerase II binding protein 1 187 279 - -
Arst4g00324 971 FunFam Transcription coactivator 97 185 - -
Arst4g00324 971 Gene3D BRCT domain 364 461 IPR036420 -
Arst4g00324 971 SUPERFAMILY BRCT domain 565 652 IPR036420 -
Arst4g00324 971 SUPERFAMILY BRCT domain 186 272 IPR036420 -
Arst4g00324 971 ProSiteProfiles BRCT domain profile. 182 271 IPR001357 -
Arst4g00324 971 FunFam Transcription coactivator 559 656 - -
Arst4g00324 971 Pfam BRCA1 C Terminus (BRCT) domain 100 170 IPR001357 -
Arst4g00324 971 Pfam BRCA1 C Terminus (BRCT) domain 374 450 IPR001357 -
Arst4g00324 971 Gene3D BRCT domain 37 94 IPR036420 -
Arst4g00324 971 Gene3D BRCT domain 658 750 IPR036420 -
Arst4g00324 971 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Arst4g00324 971 ProSiteProfiles BRCT domain profile. 663 746 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00324 Arst-Chr4 2482960 2494544 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00324 1 969 Core DNA Replication Machinery Family AT1G77320 50.048 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00324 K10728 - gmx:100804966 1312.75