Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00173 ATGGAGTGGAATGCTAAATCTCTTGGGCAATGGGACTGGGAGAACTTATACTCATTCAATACAAAACCAACTGAAAGTTCCAAGTTGCAACCAACGGATTGGAGCATGGAAGCAGATGGAGAAATCAATGTTGGGCTGATATATCCGTCCGGTGGTAGTGCTTGTTCCGGTTCTGAACTGATTCATGCTTCATCTAGGAGCTCAAAATCAGCTTCCATGAATTCATCATCAAATGGGGATAGCAAAGCATCCACAACCATGTTCACTTTCGAGCGTTCTCAAGACGACTCAACTGGAAGTGATTCCAAGAAACCATCTTCCATTGATGTTCCTATTTCATCTTCAAATACTGGAAAGAAATGTAAGGCCAATAGTCAGAATCTACAACACCCAAGCTGCCAGGTTGAAGGCTGTGGTCTAGACCTCTCATCTGCTAAAGATTACCATCGCAAACACAGGGTTTGCGAAAGCCATTCCAAGTCCCCTAGGGTACTTATAGCTGGCTTTGAACGTCGATTTTGCCAGCAATGCAGCAGGTTCCACGGTCTATCAGAGTTTGATGACAAAAAAAGAAGCTGTAGACGGCGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCTCAGCCTGAAGCAGTCCAATTAAATACATCTGCTCTGTCTTCATCACCCTATGATGCAAGGCAACTAATGAATCCATTTGTTTATTCAAGAGCTGCGACGAATATAGGTTGGCAAGATATTCAAAACAGCAGGCTACCCCAGACAAAAGATTTCCTGATGAGGCCTGCGAAAGCCTTCGACAAGATACCAAGTATTGTCACTATGCTTTCTGATGATTTTAGTGACCTTGCATCCAAAGGCATGGCAACCAGTGGGAAAGAAGATCCTATTAGCTCGTCGGATCCCAACGCCACACAAGATGTCAGCCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGTCTACATATGCTATGACTCCCCGTTTCCCTCTCCCTTCATCACAATATTCTCACCTTGATCAACAACCAGCCAATCCTAACATGTGTATCCCATTCTCAGATTGTGATAATAGCAATCGCTTCCAAGAGTTTCAGATGTTTAGTGCTCCACCCTATGATTCAGGCTATCCTTGCAACCAGCTGGACTAA 1149 0.4439 MEWNAKSLGQWDWENLYSFNTKPTESSKLQPTDWSMEADGEINVGLIYPSGGSACSGSELIHASSRSSKSASMNSSSNGDSKASTTMFTFERSQDDSTGSDSKKPSSIDVPISSSNTGKKCKANSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCESHSKSPRVLIAGFERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNTSALSSSPYDARQLMNPFVYSRAATNIGWQDIQNSRLPQTKDFLMRPAKAFDKIPSIVTMLSDDFSDLASKGMATSGKEDPISSSDPNATQDVSRALSLLSTNSWSTYAMTPRFPLPSSQYSHLDQQPANPNMCIPFSDCDNSNRFQEFQMFSAPPYDSGYPCNQLD 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00173 382 Pfam SBP domain 133 206 IPR004333 GO:0003677
Arst4g00173 382 ProSiteProfiles Zinc finger SBP-type profile. 130 207 IPR004333 GO:0003677
Arst4g00173 382 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 58 339 IPR044817 GO:0003677
Arst4g00173 382 MobiDBLite consensus disorder prediction 91 126 - -
Arst4g00173 382 FunFam Squamosa promoter-binding-like protein 14 124 194 - -
Arst4g00173 382 Gene3D - 123 194 IPR036893 GO:0003677|GO:0005634
Arst4g00173 382 SUPERFAMILY SBT domain 131 212 IPR036893 GO:0003677|GO:0005634
Arst4g00173 382 MobiDBLite consensus disorder prediction 197 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00173 Arst-Chr4 1335087 1339977 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00173 1 328 SBP-box Gene Family AT5G43270 38.601 1.63e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst4g00173 SBP 3.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00173 - - gmx:100781289 495.352