Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Arst4g00172 ATGGAGTGGAATGCTAAATCTCTTGGGCAATGGGACTGGGAGAACTTATACTCATTCAATACAAAACCAACTGAAAGTTCCAAGTTGCAACCAACGGATTGGAGCATGGAAGCAGATGGAGAAATCAATGTTGGGCTGATATATCCGTCCGGTGGTAGTGCTTGTTCCGGTTCTGAACTGATTCATGCTTCATCTAGGAGCTCAAAATCAGCTTCCATGAATTCATCATCAAATGGGGATAGCAAAGCATCCACAACCATGTTCACTTTCGAGCGTTCTCAAGACGACTCAACTGGTAAGAAAGAATTGTCAAAGGAAGAGCCAGTTGAAAATTCTCCAGCACCAGAGCCCTCTTCTGCCTCTGGTGAACCACTGCTCACTTTAAAGCTTGGTAAACGGTTGTACTTTGAGGATGTTTGTGCAGGAAGTGATTCCAAGAAACCATCTTCCATTGATGTTCCTATTTCATCTTCAAATACTGGAAAGAAATGTAAGGCCAATAGTCAGAATCTACAACACCCAAGCTGCCAGGTTGAAGGCTGTGGTCTAGACCTCTCATCTGCTAAAGATTACCATCGCAAACACAGGGTTTGCGAAAGCCATTCCAAGTCCCCTAGGGTACTTATAGCTGGCTTTGAACGTCGATTTTGCCAGCAATGCAGCAGGTTCCACGGTCTATCAGAGTTTGATGACAAAAAAAGAAGCTGTAGACGGCGTCTTTCAGATCACAATGCAAGGCGTCGCAAACCTCAGCCTGAAGCAGTCCAATTAAATACATCTGCTCTGTCTTCATCACCCTATGATGCAAGGCAACTAATGAATCCATTTGTTTATTCAAGAGCTGCGACGAATATAGGTTGGCAAGATATTCAAAACAGCAGGCTACCCCAGACAAAAGATTTCCTGATGAGGCCTGCGAAAGCCTTCGACAAGATACCAAGTATTGTCACTATGCTTTCTGATGATTTTAGTGACCTTGCATCCAAAGGCATGGCAACCAGTGGGAAAGAAGATCCTATTAGCTCGTCGGATCCCAACGCCACACAAGATGTCAGCCGTGCTCTCTCTCTTCTGTCAACCAATTCATGGTCTACATATGCTATGACTCCCCGTTTCCCTCTCCCTTCATCACAATATTCTCACCTTGATCAACAACCAGCCAATCCTAACATGTGTATCCCATTCTCAGATTGTGATAATAGCAATCGCTTCCAAGAGTTTCAGATGTTTAGTGCTCCACCCTATGATTCAGGCTATCCTTGCAACCAGCTGGACTAA 1278 0.4444 MEWNAKSLGQWDWENLYSFNTKPTESSKLQPTDWSMEADGEINVGLIYPSGGSACSGSELIHASSRSSKSASMNSSSNGDSKASTTMFTFERSQDDSTGKKELSKEEPVENSPAPEPSSASGEPLLTLKLGKRLYFEDVCAGSDSKKPSSIDVPISSSNTGKKCKANSQNLQHPSCQVEGCGLDLSSAKDYHRKHRVCESHSKSPRVLIAGFERRFCQQCSRFHGLSEFDDKKRSCRRRLSDHNARRRKPQPEAVQLNTSALSSSPYDARQLMNPFVYSRAATNIGWQDIQNSRLPQTKDFLMRPAKAFDKIPSIVTMLSDDFSDLASKGMATSGKEDPISSSDPNATQDVSRALSLLSTNSWSTYAMTPRFPLPSSQYSHLDQQPANPNMCIPFSDCDNSNRFQEFQMFSAPPYDSGYPCNQLD 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Arst4g00172 425 MobiDBLite consensus disorder prediction 149 167 - -
Arst4g00172 425 MobiDBLite consensus disorder prediction 57 93 - -
Arst4g00172 425 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 60 382 IPR044817 GO:0003677
Arst4g00172 425 MobiDBLite consensus disorder prediction 56 123 - -
Arst4g00172 425 ProSiteProfiles Zinc finger SBP-type profile. 173 250 IPR004333 GO:0003677
Arst4g00172 425 FunFam Squamosa promoter-binding-like protein 14 167 237 - -
Arst4g00172 425 Gene3D - 166 237 IPR036893 GO:0003677|GO:0005634
Arst4g00172 425 MobiDBLite consensus disorder prediction 240 261 - -
Arst4g00172 425 MobiDBLite consensus disorder prediction 142 167 - -
Arst4g00172 425 SUPERFAMILY SBT domain 174 255 IPR036893 GO:0003677|GO:0005634
Arst4g00172 425 MobiDBLite consensus disorder prediction 94 109 - -
Arst4g00172 425 Pfam SBP domain 176 249 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Arst4g00172 Arst-Chr4 1335087 1340002 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Arst4g00172 1 371 SBP-box Gene Family AT5G43270 42.386 3.65e-65 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Arst4g00172 SBP 4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Arst4g00172 - - gmx:100781289 565.844